From 5dd3837c89ab4b9d9c68604aaf8c41fec8023385 Mon Sep 17 00:00:00 2001
From: eileen-xue <40412883+eileen-xue@users.noreply.github.com>
Date: Fri, 3 Jul 2026 02:29:32 +0000
Subject: [PATCH] Update tool versions and bump image version

---
 build/ansible/vars/tool-versions.yml | 14 +++++++-------
 build/openstack-bioshell.pkr.hcl     |  2 +-
 2 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/build/ansible/vars/tool-versions.yml b/build/ansible/vars/tool-versions.yml
index 0354704..86f291d 100644
--- a/build/ansible/vars/tool-versions.yml
+++ b/build/ansible/vars/tool-versions.yml
@@ -1,22 +1,22 @@
 # ============================================================
 # Tool versions — update here, everything else follows
 # ============================================================
-singularity_version: "4.4.1"
+singularity_version: "4.5.0"
 singularity_prefix: "/opt/singularity"
 
 shpc_version: "0.1.33"
 
-go_version: "1.26.1"
+go_version: "1.26.4"
 os: "linux"
 arch: "amd64"
 
 
 java_version: "21"
-nextflow_version: "25.10.4"
-nfcore_version: "3.5.2"
+nextflow_version: "26.04.4"
+nfcore_version: "4.0.2"
 
-rstudio_version_full: "2023.12.1-402"
-rstudio_version: "2023.12.1"
+rstudio_version_full: "2026.06.0-242"
+rstudio_version: "2026.06.0"
 
 # Each platform file overrides this proxy variable
 cvmfs_quota_limit: 4096
@@ -31,4 +31,4 @@ module_base_opt: "/opt/Modules/modulefiles"
 # Common tools
 snakemake_version: "7.32.4"
 r_version: "4.3.3"
-jupyter_version: "2026.04"
\ No newline at end of file
+jupyter_version: "2026.07"
\ No newline at end of file
diff --git a/build/openstack-bioshell.pkr.hcl b/build/openstack-bioshell.pkr.hcl
index 5872b4b..9a48f3e 100644
--- a/build/openstack-bioshell.pkr.hcl
+++ b/build/openstack-bioshell.pkr.hcl
@@ -41,7 +41,7 @@ variable "platform" {
 
 variable "image_version" {
   type    = string
-  default = "1.0.0"
+  default = "1.1.0"
 }
 
 source "openstack" "ubuntu" {