Messy project json file transform name refresh

I think there might be an issue when running several transforms at once
It looks like some of the transforms are overwritten or not taken into account in the json file 🫨 

Also, would be nice to have the transforms of a `Project` instance in alphanumerical order 👼 

<img width="339" height="144" alt="Image" src="https://github.com/user-attachments/assets/610e98e3-9a3d-44e8-bea2-8880ac760204" />