From 56096e836cd3fa511aa1b8834e0c4aaf8c854e62 Mon Sep 17 00:00:00 2001
From: SonderXiaoming <1316864423@qq.com>
Date: Mon, 13 Jul 2026 14:05:56 -0400
Subject: [PATCH] Update conda environment YAML files for evscope

---
 environments/evscope_env.yml | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/environments/evscope_env.yml b/environments/evscope_env.yml
index 9be67ba..6af4f3a 100644
--- a/environments/evscope_env.yml
+++ b/environments/evscope_env.yml
@@ -13,7 +13,7 @@ dependencies:
   - subread=2.0.6
   - seqtk=1.4
   - bwa=0.7.18
-  - deeptools=3.5.5
+  - deeptools=3.5.6
   - ribodetector=0.3.1
   - r-base=4.3.1
   - r-rmarkdown
@@ -36,5 +36,8 @@ dependencies:
   - pybigwig
   - pysam
   - pip
+  - bx-python
+  - matplotlib-venn
+  - bowtie2
   - pip:
-    - CIRCexplorer2==2.3.8
+      - CIRCexplorer2==2.3.8