diff --git a/dist/js/basis/basis.d.ts b/dist/js/basis/basis.d.ts
index 6b36ea59a..a670dd4fd 100644
--- a/dist/js/basis/basis.d.ts
+++ b/dist/js/basis/basis.d.ts
@@ -1,5 +1,5 @@
 import { InMemoryEntity } from "@mat3ra/code/dist/js/entity";
-import { BasisSchema, Coordinate3DSchema, Vector3DSchema } from "@mat3ra/esse/dist/js/types";
+import { BaseInMemoryEntitySchema, BasisSchema, Coordinate3DSchema, Vector3DSchema } from "@mat3ra/esse/dist/js/types";
 import { Cell } from "../cell/cell";
 import { AtomicCoordinateValue, Coordinates } from "./coordinates";
 import { AtomicElementValue, Elements } from "./elements";
@@ -30,7 +30,8 @@ export interface ElementsAndCoordinatesConfig {
     units?: BasisSchema["units"];
     cell?: Cell;
 }
-export declare class Basis extends InMemoryEntity implements BasisSchema {
+type BasisEntitySchema<S extends BasisConfig = BasisConfig> = S & BaseInMemoryEntitySchema;
+export declare class Basis<S extends BasisConfig = BasisConfig> extends InMemoryEntity<BasisEntitySchema<S>> implements BasisSchema {
     static defaultConfig: BasisSchema;
     units: BasisSchema["units"];
     cell: Cell;
@@ -39,15 +40,15 @@ export declare class Basis extends InMemoryEntity implements BasisSchema {
     _labels: Labels;
     static _convertValuesToConfig({ elements, coordinates, units, cell, labels, }: ElementsAndCoordinatesConfig): BasisConfig;
     static fromElementsAndCoordinates({ elements, coordinates, units, cell, labels, }: ElementsAndCoordinatesConfig): Basis;
-    constructor(config?: BasisConfig);
+    constructor(config?: NoInfer<S>);
     get elements(): BasisSchema["elements"];
     set elements(elements: BasisSchema["elements"]);
     get coordinates(): BasisSchema["coordinates"];
     set coordinates(coordinates: BasisSchema["coordinates"]);
     get labels(): BasisSchema["labels"];
     set labels(labels: BasisSchema["labels"]);
-    toJSON(exclude?: string[]): BasisSchema;
-    clone(): Basis;
+    toJSON(exclude?: (keyof BasisEntitySchema<S>)[]): BasisEntitySchema<S>;
+    clone(): this;
     removeAllAtoms(): void;
     get cellRounded(): import("@mat3ra/esse/dist/js/types").Matrix3X3Schema;
     get elementsArray(): object[];
@@ -55,8 +56,8 @@ export declare class Basis extends InMemoryEntity implements BasisSchema {
     get coordinatesAsArray(): Coordinate3DSchema[];
     get isInCartesianUnits(): boolean;
     get isInCrystalUnits(): boolean;
-    toCartesian(): void;
-    toCrystal(): void;
+    toCartesian(): this;
+    toCrystal(): this;
     getElementByIndex(idx: number): AtomicElementValue;
     getElementById(id: number): AtomicElementValue;
     getCoordinateValueByIndex(idx: number): AtomicCoordinateValue;
@@ -140,12 +141,16 @@ export declare class Basis extends InMemoryEntity implements BasisSchema {
      * @summary Returns true if bases are equal, otherwise - false.
      * @param anotherBasisClsInstance {Basis} Another Basis.
      */
-    isEqualTo(anotherBasisClsInstance: Basis): boolean;
+    isEqualTo(anotherBasisClsInstance: {
+        hashString: string;
+    }): boolean;
     /**
      * @summary Returns true if basis cells are equal, otherwise - false.
      * @param anotherBasisClsInstance {Basis} Another Basis.
      */
-    hasEquivalentCellTo(anotherBasisClsInstance: Basis): boolean;
+    hasEquivalentCellTo(anotherBasisClsInstance: {
+        cell: Cell;
+    }): boolean;
     /**
      * @summary Returns the minimum cubic lattice size for a non-periodic structure.
      * Single-atom structures use the element atomic radius floored at defaultMinimumLatticeSize.
diff --git a/dist/js/basis/basis.js b/dist/js/basis/basis.js
index 775caebd2..1b3e8949e 100644
--- a/dist/js/basis/basis.js
+++ b/dist/js/basis/basis.js
@@ -35,6 +35,8 @@ const DEFAULT_BASIS_CONFIG = {
     ],
     units: "crystal",
 };
+// Keep `{` on same line as `implements` to satisfy brace-style (conflicts with Prettier multi-line heritage).
+// prettier-ignore
 class Basis extends entity_1.InMemoryEntity {
     static _convertValuesToConfig({ elements = [], coordinates = [], units = constants_1.ATOMIC_COORD_UNITS.crystal, cell = new cell_1.Cell(), labels = [], }) {
         const elementsArrayWithIdsJSON = elements_1.Elements.fromValues(elements).toJSON();
@@ -57,6 +59,7 @@ class Basis extends entity_1.InMemoryEntity {
             labels,
         }));
     }
+    // NoInfer: keep default S (or an explicit type arg) instead of inferring S from the config literal.
     constructor(config = Basis.defaultConfig) {
         super(config);
         const { elements, coordinates, units, labels } = config;
@@ -84,8 +87,6 @@ class Basis extends entity_1.InMemoryEntity {
     set labels(labels) {
         this._labels = labels_1.Labels.fromObjects(labels || []);
     }
-    // TODO: figure out how to override toJSON in the parent class with generic classes
-    // @ts-ignore
     toJSON(exclude = ["cell"]) {
         var _a;
         return {
@@ -96,7 +97,6 @@ class Basis extends entity_1.InMemoryEntity {
             ...(((_a = this.labels) === null || _a === void 0 ? void 0 : _a.length) ? { labels: this.labels } : {}),
         };
     }
-    // @ts-ignore
     clone() {
         const instance = super.clone();
         instance.cell = this.cell.clone();
@@ -127,15 +127,17 @@ class Basis extends entity_1.InMemoryEntity {
     }
     toCartesian() {
         if (this.isInCartesianUnits)
-            return;
+            return this;
         this._coordinates.mapArrayInPlace((point) => this.cell.convertPointToCartesian(point));
         this.units = constants_1.ATOMIC_COORD_UNITS.cartesian;
+        return this;
     }
     toCrystal() {
         if (this.isInCrystalUnits)
-            return;
+            return this;
         this._coordinates.mapArrayInPlace((point) => this.cell.convertPointToCrystal(point));
         this.units = constants_1.ATOMIC_COORD_UNITS.crystal;
+        return this;
     }
     getElementByIndex(idx) {
         return this._elements.getElementValueByIndex(idx);
@@ -310,7 +312,7 @@ class Basis extends entity_1.InMemoryEntity {
     /* Returns array of atomic labels E.g., ["1", "2", "", ""] */
     get atomicLabelsArray() {
         var _a;
-        const labelsArray = Array.from({ length: this.elements.length }, (_) => "");
+        const labelsArray = Array.from({ length: this.elements.length }, () => "");
         // https://dev.to/maafaishal/benchmarking-for-while-forof-and-arrayforeach-using-performancenow-1jjg
         if ((_a = this.labels) === null || _a === void 0 ? void 0 : _a.length) {
             for (let i = 0; i < this.labels.length; i++) {
@@ -447,13 +449,13 @@ class Basis extends entity_1.InMemoryEntity {
             for (let i = 0; i < this._elements.values.length; i++) {
                 for (let j = i + 1; j < this._elements.values.length; j++) {
                     const distance = utils_1.Utils.math.vDist(this._coordinates.getElementValueByIndex(i), this._coordinates.getElementValueByIndex(j));
-                    if (!distance)
-                        continue;
-                    if (extremum === "max" && distance > resultDistance) {
-                        resultDistance = distance;
-                    }
-                    if (extremum === "min" && distance < resultDistance) {
-                        resultDistance = distance;
+                    if (distance) {
+                        if (extremum === "max" && distance > resultDistance) {
+                            resultDistance = distance;
+                        }
+                        if (extremum === "min" && distance < resultDistance) {
+                            resultDistance = distance;
+                        }
                     }
                 }
             }
diff --git a/dist/js/basis/constrained_basis.d.ts b/dist/js/basis/constrained_basis.d.ts
index ea3e0441a..43c25ee28 100644
--- a/dist/js/basis/constrained_basis.d.ts
+++ b/dist/js/basis/constrained_basis.d.ts
@@ -5,7 +5,7 @@ import { AtomicCoordinateValue } from "./coordinates";
 import { AtomicElementValue } from "./elements";
 import { AtomicLabelValue } from "./labels";
 export interface ConstrainedBasisConfig extends BasisConfig {
-    constraints: AtomicConstraintsSchema;
+    constraints?: AtomicConstraintsSchema;
 }
 export interface ElementsCoordinatesAndConstraintsConfig extends ElementsAndCoordinatesConfig {
     constraints: AtomicConstraintValue[];
@@ -14,14 +14,14 @@ export interface ElementsCoordinatesAndConstraintsConfig extends ElementsAndCoor
  * @summary Extension of the Basis class able to deal with atomic constraints.
  * @extends Basis
  */
-export declare class ConstrainedBasis extends Basis {
-    _constraints: AtomicConstraints;
+export declare class ConstrainedBasis extends Basis<ConstrainedBasisConfig> {
+    private _constraints;
     constructor(config: ConstrainedBasisConfig);
     static fromElementsCoordinatesAndConstraints(config: ElementsCoordinatesAndConstraintsConfig): ConstrainedBasis;
     get constraints(): AtomicConstraintsSchema;
     set constraints(constraints: AtomicConstraintsSchema);
     get AtomicConstraints(): AtomicConstraints;
-    toJSON(): ConstrainedBasisConfig;
+    toJSON(exclude?: (keyof ConstrainedBasisConfig)[]): ConstrainedBasisConfig;
     getConstraintByIndex(idx: number): AtomicConstraintValue;
     getConstraintById(id: number): AtomicConstraintValue;
     /**
diff --git a/dist/js/basis/constrained_basis.js b/dist/js/basis/constrained_basis.js
index ce25b469a..f29ca0af8 100644
--- a/dist/js/basis/constrained_basis.js
+++ b/dist/js/basis/constrained_basis.js
@@ -11,9 +11,9 @@ const helpers_1 = require("./helpers");
  */
 class ConstrainedBasis extends basis_1.Basis {
     constructor(config) {
+        var _a;
         super(config);
-        const { constraints } = config;
-        this._constraints = constraints_1.AtomicConstraints.fromObjects(constraints || []); // `constraints` is an Array with ids
+        this._constraints = constraints_1.AtomicConstraints.fromObjects((_a = config.constraints) !== null && _a !== void 0 ? _a : []); // `constraints` is an Array with ids
     }
     static fromElementsCoordinatesAndConstraints(config) {
         const basisConfig = this._convertValuesToConfig(config);
@@ -32,9 +32,9 @@ class ConstrainedBasis extends basis_1.Basis {
     get AtomicConstraints() {
         return constraints_1.AtomicConstraints.fromObjects(this.constraints);
     }
-    toJSON() {
+    toJSON(exclude = ["cell"]) {
         return {
-            ...super.toJSON(),
+            ...super.toJSON(exclude),
             constraints: this.constraints,
         };
     }
diff --git a/dist/js/generated/MaterialSchemaMixin.d.ts b/dist/js/generated/MaterialSchemaMixin.d.ts
new file mode 100644
index 000000000..d4ee36b28
--- /dev/null
+++ b/dist/js/generated/MaterialSchemaMixin.d.ts
@@ -0,0 +1,4 @@
+import type { InMemoryEntity } from "@mat3ra/code/dist/js/entity";
+import type { MaterialPropertiesSchema } from "@mat3ra/esse/dist/js/types";
+export type MaterialSchemaMixin = MaterialPropertiesSchema;
+export declare function materialSchemaMixin<T extends InMemoryEntity>(item: InMemoryEntity): asserts item is T & MaterialSchemaMixin;
diff --git a/dist/js/generated/MaterialSchemaMixin.js b/dist/js/generated/MaterialSchemaMixin.js
new file mode 100644
index 000000000..fd5069cb0
--- /dev/null
+++ b/dist/js/generated/MaterialSchemaMixin.js
@@ -0,0 +1,75 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.materialSchemaMixin = materialSchemaMixin;
+function materialSchemaMixin(item) {
+    // @ts-expect-error
+    const properties = {
+        get formula() {
+            return this.prop("formula");
+        },
+        set formula(value) {
+            this.setProp("formula", value);
+        },
+        get unitCellFormula() {
+            return this.prop("unitCellFormula");
+        },
+        set unitCellFormula(value) {
+            this.setProp("unitCellFormula", value);
+        },
+        get basis() {
+            return this.requiredProp("basis");
+        },
+        set basis(value) {
+            this.setProp("basis", value);
+        },
+        get lattice() {
+            return this.requiredProp("lattice");
+        },
+        set lattice(value) {
+            this.setProp("lattice", value);
+        },
+        get derivedProperties() {
+            return this.prop("derivedProperties");
+        },
+        set derivedProperties(value) {
+            this.setProp("derivedProperties", value);
+        },
+        get external() {
+            return this.prop("external");
+        },
+        set external(value) {
+            this.setProp("external", value);
+        },
+        get src() {
+            return this.prop("src");
+        },
+        set src(value) {
+            this.setProp("src", value);
+        },
+        get scaledHash() {
+            return this.prop("scaledHash");
+        },
+        set scaledHash(value) {
+            this.setProp("scaledHash", value);
+        },
+        get icsdId() {
+            return this.prop("icsdId");
+        },
+        set icsdId(value) {
+            this.setProp("icsdId", value);
+        },
+        get isNonPeriodic() {
+            return this.prop("isNonPeriodic");
+        },
+        set isNonPeriodic(value) {
+            this.setProp("isNonPeriodic", value);
+        },
+        get consistencyChecks() {
+            return this.prop("consistencyChecks");
+        },
+        set consistencyChecks(value) {
+            this.setProp("consistencyChecks", value);
+        },
+    };
+    Object.defineProperties(item, Object.getOwnPropertyDescriptors(properties));
+}
diff --git a/dist/js/lattice/lattice.d.ts b/dist/js/lattice/lattice.d.ts
index 4ce327782..7b98e0d02 100644
--- a/dist/js/lattice/lattice.d.ts
+++ b/dist/js/lattice/lattice.d.ts
@@ -1,5 +1,5 @@
 import { InMemoryEntity } from "@mat3ra/code/dist/js/entity";
-import { LatticeSchema, LatticeTypeEnum, LatticeTypeExtendedEnum, LatticeVectorsSchema, Matrix3X3Schema } from "@mat3ra/esse/dist/js/types";
+import { BaseInMemoryEntitySchema, LatticeSchema, LatticeTypeEnum, LatticeTypeExtendedEnum, LatticeVectorsSchema, Matrix3X3Schema } from "@mat3ra/esse/dist/js/types";
 import { Cell } from "../cell/cell";
 import { UnitCell } from "./unit_cell";
 /**
@@ -10,7 +10,8 @@ export { defaultNonPeriodicMinimumLatticeSize, diatomicLatticePaddingFactor, mol
 export declare class LatticeVectors extends Cell implements LatticeVectorsSchema {
 }
 export type { LatticeVectorsSchema };
-export declare class Lattice extends InMemoryEntity implements LatticeSchema {
+type LatticeEntitySchema = LatticeSchema & BaseInMemoryEntitySchema;
+export declare class Lattice extends InMemoryEntity<LatticeEntitySchema> implements LatticeSchema {
     static defaultConfig: LatticeSchema;
     a: LatticeSchema["a"];
     b: LatticeSchema["b"];
@@ -63,5 +64,5 @@ export declare class Lattice extends InMemoryEntity implements LatticeSchema {
      * @example {a: true, b: false, c: false, alpha: true, beta: false, gamma: false}
      */
     get editables(): {};
-    toJSON(exclude?: string[]): LatticeSchema;
+    toJSON(exclude?: (keyof LatticeSchema)[]): LatticeSchema;
 }
diff --git a/dist/js/lattice/lattice.js b/dist/js/lattice/lattice.js
index 440b499a4..6461b6ee8 100644
--- a/dist/js/lattice/lattice.js
+++ b/dist/js/lattice/lattice.js
@@ -258,8 +258,7 @@ class Lattice extends entity_1.InMemoryEntity {
         }
         return object;
     }
-    // @ts-ignore
-    toJSON(exclude) {
+    toJSON(exclude = []) {
         return {
             ...super.toJSON(exclude),
             vectors: this.vectors.toJSON(),
diff --git a/dist/js/made.d.ts b/dist/js/made.d.ts
index 58f8dc361..219420325 100644
--- a/dist/js/made.d.ts
+++ b/dist/js/made.d.ts
@@ -7,6 +7,7 @@ import { DEFAULT_LATTICE_UNITS, LATTICE_TYPE_CONFIGS } from "./lattice/lattice_t
 import { ReciprocalLattice } from "./lattice/reciprocal/lattice_reciprocal";
 import { UnitCell } from "./lattice/unit_cell";
 import { defaultMaterialConfig, Material } from "./material";
+import { MaterialHashed } from "./material_hashed";
 import parsers from "./parsers/parsers";
 import tools from "./tools/index";
 export declare const Made: {
@@ -33,6 +34,7 @@ export declare const Made: {
         cartesian: string;
     };
     Material: typeof Material;
+    MaterialHashed: typeof MaterialHashed;
     defaultMaterialConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema;
     Lattice: typeof Lattice;
     Cell: typeof Cell;
@@ -46,15 +48,15 @@ export declare const Made: {
     parsers: {
         xyz: {
             validate: typeof import("./parsers/xyz").validate;
-            fromMaterial: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema, fractional?: boolean) => string;
+            fromMaterial: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema, fractional?: boolean, constraints?: import("@mat3ra/esse/dist/js/types").AtomicConstraintsSchema) => string;
             toBasisConfig: (txt: string, units?: string, cell?: Cell) => import("./basis/constrained_basis").ConstrainedBasisConfig;
             fromBasis: (basisClsInstance: import("./basis/constrained_basis").ConstrainedBasis, coordinatePrintFormat: string) => string;
             CombinatorialBasis: typeof import("./parsers/xyz_combinatorial_basis").CombinatorialBasis;
         };
         poscar: {
             isPoscar: (text: string) => boolean;
-            toPoscar: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema, omitConstraints?: boolean) => string;
-            fromPoscar: (fileContent: string) => object;
+            toPoscar: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema, constraints?: import("@mat3ra/esse/dist/js/types").AtomicConstraintsSchema, omitConstraints?: boolean) => string;
+            fromPoscar: (fileContent: string) => import("./parsers/poscar").MaterialSchemaWithConstraints;
             atomicConstraintsCharFromBool: (bool: boolean) => string;
             atomsCount: typeof import("./parsers/poscar").atomsCount;
         };
@@ -62,21 +64,21 @@ export declare const Made: {
             parseMeta: (txt: string) => import("./parsers/cif").Meta;
         };
         espresso: {
-            toEspressoFormat: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema) => string;
+            toEspressoFormat: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema, constraints?: import("@mat3ra/esse/dist/js/types").AtomicConstraintsSchema) => string;
         };
         nativeFormatParsers: {
-            detectFormat: (text: string) => string;
-            convertFromNativeFormat: (text: string) => any;
+            detectFormat: (text: string) => "json" | "poscar" | "unknown";
+            convertFromNativeFormat: (text: string) => import("./parsers/poscar").MaterialSchemaWithConstraints;
         };
     };
     tools: {
         surface: {
-            generateConfig: (material: Material, millerIndices: import("@mat3ra/esse/dist/js/types").Coordinate3DSchema, numberOfLayers?: number, vx?: number, vy?: number) => import("./tools/surface").SlabConfigSchema;
+            generateConfig: <S extends import("@mat3ra/esse/dist/js/types").MaterialSchema = import("@mat3ra/esse/dist/js/types").MaterialSchema>(material: Material<S>, millerIndices: import("@mat3ra/esse/dist/js/types").Coordinate3DSchema, numberOfLayers?: number, vx?: number, vy?: number) => import("./tools/surface").SlabConfigSchema;
         };
         supercell: {
-            generateConfig: (material: Material, supercellMatrix: import("@mat3ra/esse/dist/js/types").Matrix3X3Schema) => {
+            generateConfig: <S extends import("@mat3ra/esse/dist/js/types").MaterialSchema = import("@mat3ra/esse/dist/js/types").MaterialSchema>(material: Material<S>, supercellMatrix: import("@mat3ra/esse/dist/js/types").Matrix3X3Schema) => {
                 name: string;
-                basis: import("@mat3ra/esse/dist/js/types").BasisSchema;
+                basis: import("./basis/basis").BasisConfig & import("@mat3ra/esse/dist/js/types").BaseInMemoryEntitySchema;
                 lattice: import("@mat3ra/esse/dist/js/types").LatticeSchema;
             };
             generateNewBasisWithinSupercell: (basis: Basis | import("./basis/constrained_basis").ConstrainedBasis, cell: Cell, supercell: Cell, supercellMatrix: import("@mat3ra/esse/dist/js/types").Matrix3X3Schema) => Basis;
@@ -88,7 +90,7 @@ export declare const Made: {
         };
         basis: {
             repeat: (basis: Basis, repetitions: number[]) => Basis;
-            interpolate: (initialBasis: Basis, finalBasis: Basis, numberOfSteps?: number) => Basis[];
+            interpolate: (initialBasis: Basis, finalBasis: Basis, numberOfSteps?: number) => Basis<import("./basis/basis").BasisConfig>[];
         };
     };
     LATTICE_TYPE_CONFIGS: import("./lattice/lattice_types").LatticeTypeConfig[];
@@ -101,4 +103,4 @@ export declare const Made: {
         };
     };
 };
-export { coefficients, tolerance, units, ATOMIC_COORD_UNITS, Material, defaultMaterialConfig, Lattice, Cell, UnitCell, defaultNonPeriodicMinimumLatticeSize, diatomicLatticePaddingFactor, molecularLatticePaddingFactor, ReciprocalLattice, Basis, AtomicConstraints, parsers, tools, LATTICE_TYPE_CONFIGS, DEFAULT_LATTICE_UNITS, };
+export { coefficients, tolerance, units, ATOMIC_COORD_UNITS, Material, MaterialHashed, defaultMaterialConfig, Lattice, Cell, UnitCell, defaultNonPeriodicMinimumLatticeSize, diatomicLatticePaddingFactor, molecularLatticePaddingFactor, ReciprocalLattice, Basis, AtomicConstraints, parsers, tools, LATTICE_TYPE_CONFIGS, DEFAULT_LATTICE_UNITS, };
diff --git a/dist/js/made.js b/dist/js/made.js
index 2c836f299..bd00ffffa 100644
--- a/dist/js/made.js
+++ b/dist/js/made.js
@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.DEFAULT_LATTICE_UNITS = exports.LATTICE_TYPE_CONFIGS = exports.tools = exports.parsers = exports.AtomicConstraints = exports.Basis = exports.ReciprocalLattice = exports.molecularLatticePaddingFactor = exports.diatomicLatticePaddingFactor = exports.defaultNonPeriodicMinimumLatticeSize = exports.UnitCell = exports.Cell = exports.Lattice = exports.defaultMaterialConfig = exports.Material = exports.ATOMIC_COORD_UNITS = exports.units = exports.tolerance = exports.coefficients = exports.Made = void 0;
+exports.DEFAULT_LATTICE_UNITS = exports.LATTICE_TYPE_CONFIGS = exports.tools = exports.parsers = exports.AtomicConstraints = exports.Basis = exports.ReciprocalLattice = exports.molecularLatticePaddingFactor = exports.diatomicLatticePaddingFactor = exports.defaultNonPeriodicMinimumLatticeSize = exports.UnitCell = exports.Cell = exports.Lattice = exports.defaultMaterialConfig = exports.MaterialHashed = exports.Material = exports.ATOMIC_COORD_UNITS = exports.units = exports.tolerance = exports.coefficients = exports.Made = void 0;
 const basis_1 = require("./basis/basis");
 Object.defineProperty(exports, "Basis", { enumerable: true, get: function () { return basis_1.Basis; } });
 const cell_1 = require("./cell/cell");
@@ -30,6 +30,8 @@ Object.defineProperty(exports, "UnitCell", { enumerable: true, get: function ()
 const material_1 = require("./material");
 Object.defineProperty(exports, "defaultMaterialConfig", { enumerable: true, get: function () { return material_1.defaultMaterialConfig; } });
 Object.defineProperty(exports, "Material", { enumerable: true, get: function () { return material_1.Material; } });
+const material_hashed_1 = require("./material_hashed");
+Object.defineProperty(exports, "MaterialHashed", { enumerable: true, get: function () { return material_hashed_1.MaterialHashed; } });
 const parsers_1 = __importDefault(require("./parsers/parsers"));
 exports.parsers = parsers_1.default;
 const index_1 = __importDefault(require("./tools/index"));
@@ -40,6 +42,7 @@ exports.Made = {
     units: constants_1.units,
     ATOMIC_COORD_UNITS: constants_1.ATOMIC_COORD_UNITS,
     Material: material_1.Material,
+    MaterialHashed: material_hashed_1.MaterialHashed,
     defaultMaterialConfig: material_1.defaultMaterialConfig,
     Lattice: lattice_1.Lattice,
     Cell: cell_1.Cell,
diff --git a/dist/js/material.d.ts b/dist/js/material.d.ts
index 40841b3d3..706f7eac1 100644
--- a/dist/js/material.d.ts
+++ b/dist/js/material.d.ts
@@ -1,38 +1,28 @@
-import { type DefaultableInMemoryEntity, InMemoryEntity } from "@mat3ra/code/dist/js/entity";
-import { type HasConsistencyChecks } from "@mat3ra/code/dist/js/entity/mixins/HasConsistencyChecksMixin";
+import { InMemoryEntity } from "@mat3ra/code/dist/js/entity";
+import { type Defaultable } from "@mat3ra/code/dist/js/entity/mixins/DefaultableMixin";
 import { type HasMetadata } from "@mat3ra/code/dist/js/entity/mixins/HasMetadataMixin";
-import type { AnyObject } from "@mat3ra/esse/dist/js/esse/types";
-import type { AtomicConstraintsSchema, ConsistencyCheck, DerivedPropertiesSchema, FileSourceSchema, LatticeSchema, MaterialSchema } from "@mat3ra/esse/dist/js/types";
+import { type NamedEntity } from "@mat3ra/code/dist/js/entity/mixins/NamedEntityMixin";
+import type { AtomicConstraintsSchema, BasisSchema, ConsistencyCheck, DerivedPropertiesSchema, FileSourceSchema, LatticeSchema, MaterialSchema } from "@mat3ra/esse/dist/js/types";
 import type { BasisConfig } from "./basis/basis";
-import { type ConstrainedBasisConfig, ConstrainedBasis } from "./basis/constrained_basis";
+import { ConstrainedBasis } from "./basis/constrained_basis";
 import { Constraint } from "./constraints/constraints";
+import { type MaterialSchemaMixin } from "./generated/MaterialSchemaMixin";
 import { Lattice } from "./lattice/lattice";
-interface Material extends HasConsistencyChecks, DefaultableInMemoryEntity, Required<HasMetadata<MaterialSchema["metadata"]>> {
+export type PartialBy<T, K extends keyof T> = Omit<T, K> & Partial<Pick<T, K>>;
+type Schema = MaterialSchema;
+export type MaterialConfig<S extends Schema = Schema> = PartialBy<S, "name" | "metadata">;
+export declare const defaultMaterialConfig: Schema;
+interface BaseMaterial extends MaterialSchemaMixin, NamedEntity, Defaultable, Required<HasMetadata<Schema["metadata"]>> {
 }
-type MaterialSchemaWithConsistencyChecksAsString = Omit<MaterialSchema, "consistencyChecks"> & {
-    consistencyChecks?: ConsistencyCheck[];
-};
-type OptionallyConstrainedBasisConfig = BasisConfig & Partial<Pick<ConstrainedBasisConfig, "constraints">>;
-type Schema = MaterialSchemaWithConsistencyChecksAsString;
-export declare const defaultMaterialConfig: MaterialSchema;
-declare class Material extends InMemoryEntity implements Schema {
+declare class BaseMaterial<S extends Schema = Schema> extends InMemoryEntity<S> {
+}
+declare class Material<S extends Schema = Schema> extends BaseMaterial<S> implements Schema {
     static createDefault: () => Material;
-    static get defaultConfig(): MaterialSchema;
+    static get defaultConfig(): MaterialConfig;
     static constructMaterialFileSource(fileName: string, fileContent: string, fileExtension: string): FileSourceSchema;
-    get name(): string;
-    set name(name: string);
-    get src(): FileSourceSchema | undefined;
-    set src(src: FileSourceSchema | undefined);
+    constraints: AtomicConstraintsSchema;
+    constructor(config: NoInfer<MaterialConfig<S>>, constraints?: AtomicConstraintsSchema);
     updateFormula(): void;
-    /**
-     * Gets Bolean value for whether or not a material is non-periodic vs periodic.
-     * False = periodic, True = non-periodic
-     */
-    get isNonPeriodic(): boolean;
-    /**
-     * @summary Sets the value of isNonPeriodic based on Boolean value passed as an argument.
-     */
-    set isNonPeriodic(bool: boolean);
     /**
      * @summary Returns the specific derived property (as specified by name) for a material.
      */
@@ -71,29 +61,18 @@ declare class Material extends InMemoryEntity implements Schema {
      * @summary Returns the derived properties array for a material.
      */
     getDerivedProperties(): DerivedPropertiesSchema;
-    /**
-     * Gets material's formula
-     */
-    get formula(): string;
-    get unitCellFormula(): string;
     unsetFileProps(): void;
-    /**
-     * @param textOrObject Basis text or JSON object.
-     * @param format Format (xyz, etc.)
-     * @param unitz crystal/cartesian
-     */
-    setBasis(textOrObject: string | BasisConfig, format?: string, unitz?: string): void;
+    setBasis(basis: BasisConfig): void;
+    setBasis(basis: string, format: "xyz", unitz?: BasisSchema["units"]): void;
     setBasisConstraints(constraints: Constraint[]): void;
     setBasisConstraintsFromArrayOfObjects(constraints: AtomicConstraintsSchema): void;
-    get basis(): OptionallyConstrainedBasisConfig;
-    get Basis(): ConstrainedBasis;
+    getBasis(constraints?: AtomicConstraintsSchema): ConstrainedBasis;
+    setLattice(lattice: LatticeSchema): void;
+    getLattice(): Lattice;
     /**
      * High-level access to unique elements from material instead of basis.
      */
     get uniqueElements(): ("H" | "He" | "Li" | "Be" | "B" | "C" | "N" | "O" | "F" | "Ne" | "Na" | "Mg" | "Al" | "Si" | "P" | "S" | "Cl" | "Ar" | "K" | "Ca" | "Sc" | "Ti" | "V" | "Cr" | "Mn" | "Fe" | "Co" | "Ni" | "Cu" | "Zn" | "Ga" | "Ge" | "As" | "Se" | "Br" | "Kr" | "Rb" | "Sr" | "Y" | "Zr" | "Nb" | "Mo" | "Tc" | "Ru" | "Rh" | "Pd" | "Ag" | "Cd" | "In" | "Sn" | "Sb" | "Te" | "I" | "Xe" | "Cs" | "Ba" | "La" | "Ce" | "Pr" | "Nd" | "Pm" | "Sm" | "Eu" | "Gd" | "Tb" | "Dy" | "Ho" | "Er" | "Tm" | "Yb" | "Lu" | "Hf" | "Ta" | "W" | "Re" | "Os" | "Ir" | "Pt" | "Au" | "Hg" | "Tl" | "Pb" | "Bi" | "Po" | "At" | "Rn" | "Fr" | "Ra" | "Ac" | "Th" | "Pa" | "U" | "Np" | "Pu" | "Am" | "Cm" | "Bk" | "Cf" | "Es" | "Fm" | "Md" | "No" | "Lr" | "Rf" | "Db" | "Sg" | "Bh" | "Hs" | "Mt" | "Ds" | "Rg" | "Cn" | "Nh" | "Fl" | "Mc" | "Lv" | "Ts" | "Og" | "X" | "Vac")[];
-    get lattice(): LatticeSchema;
-    set lattice(config: LatticeSchema);
-    get Lattice(): Lattice;
     /**
      * Returns the inchi string from the derivedProperties for a non-periodic material, or throws an error if the
      *  inchi cannot be found.
@@ -111,25 +90,18 @@ declare class Material extends InMemoryEntity implements Schema {
      * @param isScaled Whether to scale the lattice parameter 'a' to 1.
      */
     calculateHash(salt?: string, isScaled?: boolean, bypassNonPeriodicCheck?: boolean): string;
-    set hash(hash: string);
-    get hash(): string;
-    /**
-     * Calculates hash from basis and lattice as above + scales lattice properties to make lattice.a = 1
-     */
-    get scaledHash(): string;
-    get external(): MaterialSchema["external"];
-    set external(external: MaterialSchema["external"]);
     /**
      * Converts basis to crystal/fractional coordinates.
      */
-    toCrystal(): void;
+    toCrystal(constraints?: AtomicConstraintsSchema): void;
     /**
      * Converts current material's basis coordinates to cartesian.
      * No changes if coordinates already cartesian.
      */
-    toCartesian(): void;
+    toCartesian(constraints?: AtomicConstraintsSchema): void;
     /**
      * Returns material's basis in XYZ format.
+     * Uses ESSE material JSON plus constraints separately (same contract as POSCAR/QE serializers).
      */
     getBasisAsXyz(fractional?: boolean): string;
     /**
@@ -150,6 +122,10 @@ declare class Material extends InMemoryEntity implements Schema {
      * Returns material in POSCAR format. Pass `true` to ignore original poscar source and re-serialize.
      */
     getAsPOSCAR(ignoreOriginal?: boolean, omitConstraints?: boolean): string;
+    /**
+     * Preserve private constraints via the second constructor argument (never on basis JSON).
+     */
+    clone(extraContext?: object): this;
     /**
      * Returns a copy of the material with conventional cell constructed instead of primitive.
      */
@@ -164,6 +140,6 @@ declare class Material extends InMemoryEntity implements Schema {
      * @returns Array of checks results
      */
     getBasisConsistencyChecks(): ConsistencyCheck[];
-    toJSON(): MaterialSchema & AnyObject;
+    toJSON(): S;
 }
 export { Material };
diff --git a/dist/js/material.js b/dist/js/material.js
index 9952d317b..bdb289071 100644
--- a/dist/js/material.js
+++ b/dist/js/material.js
@@ -6,15 +6,25 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.Material = exports.defaultMaterialConfig = void 0;
 const entity_1 = require("@mat3ra/code/dist/js/entity");
 const DefaultableMixin_1 = require("@mat3ra/code/dist/js/entity/mixins/DefaultableMixin");
-const HasConsistencyChecksMixin_1 = require("@mat3ra/code/dist/js/entity/mixins/HasConsistencyChecksMixin");
 const HasMetadataMixin_1 = require("@mat3ra/code/dist/js/entity/mixins/HasMetadataMixin");
+const NamedEntityMixin_1 = require("@mat3ra/code/dist/js/entity/mixins/NamedEntityMixin");
 const crypto_js_1 = __importDefault(require("crypto-js"));
 const constrained_basis_1 = require("./basis/constrained_basis");
 const conventional_cell_1 = require("./cell/conventional_cell");
 const constraints_1 = require("./constraints/constraints");
+const MaterialSchemaMixin_1 = require("./generated/MaterialSchemaMixin");
 const lattice_1 = require("./lattice/lattice");
 const parsers_1 = __importDefault(require("./parsers/parsers"));
 const supercell_1 = __importDefault(require("./tools/supercell"));
+function parseBasis(textOrObject, format, unitz) {
+    if (typeof textOrObject === "string") {
+        if (format !== "xyz") {
+            throw new Error("Invalid format");
+        }
+        return parsers_1.default.xyz.toBasisConfig(textOrObject, unitz);
+    }
+    return { constraints: [], ...textOrObject };
+}
 exports.defaultMaterialConfig = {
     name: "Silicon FCC",
     basis: {
@@ -56,7 +66,13 @@ exports.defaultMaterialConfig = {
     },
     metadata: {},
 };
-class Material extends entity_1.InMemoryEntity {
+class BaseMaterial extends entity_1.InMemoryEntity {
+}
+(0, MaterialSchemaMixin_1.materialSchemaMixin)(BaseMaterial.prototype);
+(0, NamedEntityMixin_1.namedEntityMixin)(BaseMaterial.prototype);
+(0, DefaultableMixin_1.defaultableEntityMixin)(BaseMaterial);
+(0, HasMetadataMixin_1.hasMetadataMixin)(BaseMaterial.prototype);
+class Material extends BaseMaterial {
     static get defaultConfig() {
         return exports.defaultMaterialConfig;
     }
@@ -68,35 +84,25 @@ class Material extends entity_1.InMemoryEntity {
             hash: crypto_js_1.default.MD5(fileContent).toString(),
         };
     }
-    get name() {
-        var _a;
-        return (_a = this.prop("name")) !== null && _a !== void 0 ? _a : this.formula; // if name is not set, use formula, but keep empty string
-    }
-    set name(name) {
-        this.setProp("name", name);
-    }
-    get src() {
-        return this.prop("src");
-    }
-    set src(src) {
-        this.setProp("src", src);
+    // NoInfer: keep default S (or an explicit type arg) instead of inferring S from the config literal.
+    // Atomic constraints are accepted only via the second argument (not on config.basis).
+    constructor(config, constraints = []) {
+        var _a, _b, _c, _d;
+        super({
+            ...config,
+            formula: (_a = config.formula) !== null && _a !== void 0 ? _a : "",
+            name: (_c = (_b = config.name) !== null && _b !== void 0 ? _b : config.formula) !== null && _c !== void 0 ? _c : "",
+            metadata: (_d = config.metadata) !== null && _d !== void 0 ? _d : {},
+        });
+        this.constraints = [];
+        this.formula = config.formula || this.getBasis().formula;
+        this.name = this.name || this.formula;
+        this.constraints = constraints;
     }
     updateFormula() {
-        this.setProp("formula", this.Basis.formula);
-        this.setProp("unitCellFormula", this.Basis.unitCellFormula);
-    }
-    /**
-     * Gets Bolean value for whether or not a material is non-periodic vs periodic.
-     * False = periodic, True = non-periodic
-     */
-    get isNonPeriodic() {
-        return this.prop("isNonPeriodic", false);
-    }
-    /**
-     * @summary Sets the value of isNonPeriodic based on Boolean value passed as an argument.
-     */
-    set isNonPeriodic(bool) {
-        this.setProp("isNonPeriodic", bool);
+        const basis = this.getBasis();
+        this.formula = basis.formula;
+        this.unitCellFormula = basis.unitCellFormula;
     }
     /**
      * @summary Returns the specific derived property (as specified by name) for a material.
@@ -108,45 +114,24 @@ class Material extends entity_1.InMemoryEntity {
      * @summary Returns the derived properties array for a material.
      */
     getDerivedProperties() {
-        return this.prop("derivedProperties", []);
-    }
-    /**
-     * Gets material's formula
-     */
-    get formula() {
-        return this.prop("formula") || this.Basis.formula;
-    }
-    get unitCellFormula() {
-        return this.prop("unitCellFormula") || this.Basis.unitCellFormula;
+        var _a;
+        return (_a = this.derivedProperties) !== null && _a !== void 0 ? _a : [];
     }
     unsetFileProps() {
         this.unsetProp("src");
         this.unsetProp("icsdId");
         this.unsetProp("external");
     }
-    /**
-     * @param textOrObject Basis text or JSON object.
-     * @param format Format (xyz, etc.)
-     * @param unitz crystal/cartesian
-     */
     setBasis(textOrObject, format, unitz) {
-        let basis;
-        if (typeof textOrObject === "string" && format === "xyz") {
-            basis = parsers_1.default.xyz.toBasisConfig(textOrObject, unitz);
-        }
-        else {
-            basis = textOrObject;
-        }
-        this.setProp("basis", basis);
+        const { constraints, ...basis } = parseBasis(textOrObject, format, unitz);
+        this.basis = basis;
+        this.constraints = constraints !== null && constraints !== void 0 ? constraints : [];
         this.unsetFileProps();
         this.updateFormula();
     }
     setBasisConstraints(constraints) {
-        const basisWithConstraints = {
-            ...this.basis,
-            constraints: constraints.map((c) => c.toJSON()),
-        };
-        this.setBasis(basisWithConstraints);
+        this.constraints = constraints.map((c) => ({ id: c.id, value: c.value }));
+        this.unsetFileProps();
     }
     setBasisConstraintsFromArrayOfObjects(constraints) {
         const constraintsInstances = constraints.map((c) => {
@@ -154,44 +139,37 @@ class Material extends entity_1.InMemoryEntity {
         });
         this.setBasisConstraints(constraintsInstances);
     }
-    get basis() {
-        return this.requiredProp("basis");
-    }
-    // returns the instance of {ConstrainedBasis} class
-    get Basis() {
+    getBasis(constraints) {
         const basisData = this.basis;
         return new constrained_basis_1.ConstrainedBasis({
             ...basisData,
-            cell: this.Lattice.vectors,
-            constraints: basisData.constraints || [],
+            cell: this.getLattice().vectors,
+            constraints: constraints !== null && constraints !== void 0 ? constraints : this.constraints,
         });
     }
-    /**
-     * High-level access to unique elements from material instead of basis.
-     */
-    get uniqueElements() {
-        return this.Basis.uniqueElements;
-    }
-    get lattice() {
-        return this.prop("lattice");
-    }
-    set lattice(config) {
-        const originalIsInCrystalUnits = this.Basis.isInCrystalUnits;
-        const basis = this.Basis;
+    setLattice(lattice) {
+        const basis = this.getBasis();
+        const originalIsInCrystalUnits = basis.isInCrystalUnits;
         basis.toCartesian();
-        const newLattice = new lattice_1.Lattice(config);
-        basis.cell = newLattice.vectors;
-        if (originalIsInCrystalUnits)
+        basis.cell = new lattice_1.Lattice(lattice).vectors;
+        if (originalIsInCrystalUnits) {
             basis.toCrystal();
-        // Preserve all properties from the original basis to ensure constraints are included
-        const newBasisConfig = basis.toJSON();
-        this.setProp("basis", newBasisConfig);
-        this.setProp("lattice", config);
+        }
+        const { constraints: nextConstraints, ...basisWithoutConstraints } = basis.toJSON();
+        this.basis = basisWithoutConstraints;
+        this.constraints = nextConstraints !== null && nextConstraints !== void 0 ? nextConstraints : this.constraints;
+        this.lattice = lattice;
         this.unsetFileProps();
     }
-    get Lattice() {
+    getLattice() {
         return new lattice_1.Lattice(this.lattice);
     }
+    /**
+     * High-level access to unique elements from material instead of basis.
+     */
+    get uniqueElements() {
+        return this.getBasis().uniqueElements;
+    }
     /**
      * Returns the inchi string from the derivedProperties for a non-periodic material, or throws an error if the
      *  inchi cannot be found.
@@ -218,53 +196,36 @@ class Material extends entity_1.InMemoryEntity {
         let message;
         if (!this.isNonPeriodic || bypassNonPeriodicCheck) {
             message =
-                this.Basis.hashString + "#" + this.Lattice.getHashString(isScaled) + "#" + salt;
+                this.getBasis().hashString +
+                    "#" +
+                    this.getLattice().getHashString(isScaled) +
+                    "#" +
+                    salt;
         }
         else {
             message = this.getInchiStringForHash();
         }
         return crypto_js_1.default.MD5(message).toString();
     }
-    set hash(hash) {
-        this.setProp("hash", hash);
-    }
-    get hash() {
-        return this.prop("hash");
-    }
-    /**
-     * Calculates hash from basis and lattice as above + scales lattice properties to make lattice.a = 1
-     */
-    get scaledHash() {
-        return this.calculateHash("", true);
-    }
-    get external() {
-        return this.prop("external");
-    }
-    set external(external) {
-        this.setProp("external", external);
-    }
     /**
      * Converts basis to crystal/fractional coordinates.
      */
-    toCrystal() {
-        const basis = this.Basis;
-        basis.toCrystal();
-        this.setProp("basis", basis.toJSON());
+    toCrystal(constraints) {
+        this.setBasis(this.getBasis(constraints).toCrystal().toJSON());
     }
     /**
      * Converts current material's basis coordinates to cartesian.
      * No changes if coordinates already cartesian.
      */
-    toCartesian() {
-        const basis = this.Basis;
-        basis.toCartesian();
-        this.setProp("basis", basis.toJSON());
+    toCartesian(constraints) {
+        this.setBasis(this.getBasis(constraints).toCartesian().toJSON());
     }
     /**
      * Returns material's basis in XYZ format.
+     * Uses ESSE material JSON plus constraints separately (same contract as POSCAR/QE serializers).
      */
     getBasisAsXyz(fractional = false) {
-        return parsers_1.default.xyz.fromMaterial(this.toJSON(), fractional);
+        return parsers_1.default.xyz.fromMaterial(this.toJSON(), fractional, this.constraints);
     }
     /**
      * Returns material in Quantum Espresso output format:
@@ -280,7 +241,7 @@ class Material extends entity_1.InMemoryEntity {
      * ```
      */
     getAsQEFormat() {
-        return parsers_1.default.espresso.toEspressoFormat(this.toJSON());
+        return parsers_1.default.espresso.toEspressoFormat(this.toJSON(), this.constraints);
     }
     /**
      * Returns material in POSCAR format. Pass `true` to ignore original poscar source and re-serialize.
@@ -291,24 +252,33 @@ class Material extends entity_1.InMemoryEntity {
         if (((_a = this.src) === null || _a === void 0 ? void 0 : _a.extension) === "poscar" && !ignoreOriginal) {
             return this.src.text;
         }
-        return parsers_1.default.poscar.toPoscar(this.toJSON(), omitConstraints);
+        return parsers_1.default.poscar.toPoscar(this.toJSON(), this.constraints, omitConstraints);
+    }
+    /**
+     * Preserve private constraints via the second constructor argument (never on basis JSON).
+     */
+    clone(extraContext) {
+        return new this.constructor({
+            ...this.toJSON(),
+            ...extraContext,
+        }, this.constraints);
     }
     /**
      * Returns a copy of the material with conventional cell constructed instead of primitive.
      */
     getACopyWithConventionalCell() {
         const material = this.clone();
+        const lattice = this.getLattice();
         // if conventional and primitive cells are the same => return a copy.
-        if ((0, conventional_cell_1.isConventionalCellSameAsPrimitiveForLatticeType)(this.Lattice.type)) {
+        if ((0, conventional_cell_1.isConventionalCellSameAsPrimitiveForLatticeType)(lattice.type)) {
             return material;
         }
-        const conventionalSupercellMatrix = conventional_cell_1.PRIMITIVE_TO_CONVENTIONAL_CELL_MULTIPLIERS[this.Lattice.type];
-        const conventionalLatticeType = conventional_cell_1.PRIMITIVE_TO_CONVENTIONAL_CELL_LATTICE_TYPES[this.Lattice.type];
+        const conventionalSupercellMatrix = conventional_cell_1.PRIMITIVE_TO_CONVENTIONAL_CELL_MULTIPLIERS[lattice.type];
+        const conventionalLatticeType = conventional_cell_1.PRIMITIVE_TO_CONVENTIONAL_CELL_LATTICE_TYPES[lattice.type];
         const config = supercell_1.default.generateConfig(this, conventionalSupercellMatrix);
         config.lattice.type = conventionalLatticeType;
         config.name = `${this.name} - conventional cell`;
-        // @ts-expect-error
-        return new this.constructor(config);
+        return new this.constructor(config, this.constraints);
     }
     /**
      * @summary a series of checks for the material and returns an array of results in ConsistencyChecks format.
@@ -326,8 +296,8 @@ class Material extends entity_1.InMemoryEntity {
     getBasisConsistencyChecks() {
         const checks = [];
         const limit = 1000;
-        const basis = this.Basis;
-        if (this.Basis.elements.length < limit) {
+        const basis = this.getBasis();
+        if (basis.elements.length < limit) {
             const overlappingAtomsGroups = basis.getOverlappingAtoms();
             overlappingAtomsGroups.forEach(({ id1, id2, element1, element2 }) => {
                 checks.push({
@@ -346,17 +316,13 @@ class Material extends entity_1.InMemoryEntity {
         return checks;
     }
     toJSON() {
-        // validation intoJSON() method will fail if name is not set in _json
-        this.name = this.name || this.formula;
+        const { constraints, ...basis } = this.getBasis().toJSON();
         return {
             ...super.toJSON(),
-            lattice: this.Lattice.toJSON(),
-            basis: this.Basis.toJSON(),
+            lattice: this.getLattice().toJSON(),
+            basis,
             isNonPeriodic: this.isNonPeriodic,
         };
     }
 }
 exports.Material = Material;
-(0, DefaultableMixin_1.defaultableEntityMixin)(Material);
-(0, HasConsistencyChecksMixin_1.hasConsistencyChecksMixin)(Material.prototype);
-(0, HasMetadataMixin_1.hasMetadataMixin)(Material.prototype);
diff --git a/dist/js/material_hashed.d.ts b/dist/js/material_hashed.d.ts
new file mode 100644
index 000000000..632d7ecdd
--- /dev/null
+++ b/dist/js/material_hashed.d.ts
@@ -0,0 +1,18 @@
+import { type HashedSchemaMixin } from "@mat3ra/code/dist/js/generated/HashedSchemaMixin";
+import type { AtomicConstraintsSchema, MaterialHashedSchema, MaterialSchema } from "@mat3ra/esse/dist/js/types";
+import { type PartialBy, Material } from "./material";
+type Schema = MaterialHashedSchema;
+export type MaterialHashedConfig<S extends Schema = Schema> = PartialBy<S, "name" | "metadata" | "hash">;
+interface MaterialHashed extends HashedSchemaMixin {
+}
+declare class MaterialHashed<S extends Schema = Schema> extends Material<S> implements Schema {
+    static createDefault: () => MaterialHashed;
+    static get defaultConfig(): MaterialHashedConfig;
+    constructor(config: NoInfer<MaterialHashedConfig<S>>, constraints?: AtomicConstraintsSchema);
+    get basis(): MaterialSchema["basis"];
+    set basis(value: MaterialSchema["basis"]);
+    get lattice(): MaterialSchema["lattice"];
+    set lattice(value: MaterialSchema["lattice"]);
+    updateHash(): void;
+}
+export { MaterialHashed };
diff --git a/dist/js/material_hashed.js b/dist/js/material_hashed.js
new file mode 100644
index 000000000..227950e28
--- /dev/null
+++ b/dist/js/material_hashed.js
@@ -0,0 +1,39 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.MaterialHashed = void 0;
+const HashedSchemaMixin_1 = require("@mat3ra/code/dist/js/generated/HashedSchemaMixin");
+const material_1 = require("./material");
+class MaterialHashed extends material_1.Material {
+    static get defaultConfig() {
+        return material_1.defaultMaterialConfig;
+    }
+    // NoInfer: keep default S (or an explicit type arg) instead of inferring S from the config literal.
+    constructor(config, constraints = []) {
+        var _a, _b;
+        // MaterialConfig<S> still requires hash; use a placeholder until calculateHash can run.
+        super({
+            ...config,
+            hash: (_a = config.hash) !== null && _a !== void 0 ? _a : "",
+        }, constraints);
+        this.hash = (_b = config.hash) !== null && _b !== void 0 ? _b : this.calculateHash("", false, this.isNonPeriodic);
+    }
+    get basis() {
+        return super.basis;
+    }
+    set basis(value) {
+        super.basis = value;
+        this.updateHash();
+    }
+    get lattice() {
+        return super.lattice;
+    }
+    set lattice(value) {
+        super.lattice = value;
+        this.updateHash();
+    }
+    updateHash() {
+        this.hash = this.calculateHash("", false, this.isNonPeriodic);
+    }
+}
+exports.MaterialHashed = MaterialHashed;
+(0, HashedSchemaMixin_1.hashedSchemaMixin)(MaterialHashed.prototype);
diff --git a/dist/js/parsers/espresso.d.ts b/dist/js/parsers/espresso.d.ts
index c3e448384..9dc90f72e 100644
--- a/dist/js/parsers/espresso.d.ts
+++ b/dist/js/parsers/espresso.d.ts
@@ -1,9 +1,9 @@
-import { MaterialSchema } from "@mat3ra/esse/dist/js/types";
+import { AtomicConstraintsSchema, MaterialSchema } from "@mat3ra/esse/dist/js/types";
 /**
  * Construct textual representation of a materialOrConfig according to Quantum ESPRESSO pw.x input format.
- * @param materialOrConfig - material class instance or its config object
+ * Constraints are not part of ESSE basis — pass them separately.
  */
-declare function toEspressoFormat(materialOrConfig: MaterialSchema): string;
+declare function toEspressoFormat(materialOrConfig: MaterialSchema, constraints?: AtomicConstraintsSchema): string;
 declare const _default: {
     toEspressoFormat: typeof toEspressoFormat;
 };
diff --git a/dist/js/parsers/espresso.js b/dist/js/parsers/espresso.js
index 8afec4a00..4676edf04 100644
--- a/dist/js/parsers/espresso.js
+++ b/dist/js/parsers/espresso.js
@@ -9,15 +9,15 @@ const lattice_1 = require("../lattice/lattice");
 const xyz_1 = __importDefault(require("./xyz"));
 /**
  * Construct textual representation of a materialOrConfig according to Quantum ESPRESSO pw.x input format.
- * @param materialOrConfig - material class instance or its config object
+ * Constraints are not part of ESSE basis — pass them separately.
  */
-function toEspressoFormat(materialOrConfig) {
+function toEspressoFormat(materialOrConfig, constraints = []) {
     const l = new lattice_1.Lattice(materialOrConfig.lattice);
     const vectors = l.vectorArrays;
     const vectorsAsString = (0, lodash_1.map)(vectors, (v) => {
         return `${underscore_string_1.default.sprintf("%14.9f", v[0])}\t${underscore_string_1.default.sprintf("%14.9f", v[1])}\t${underscore_string_1.default.sprintf("%14.9f", v[2])}`;
     }).join("\n");
-    return underscore_string_1.default.sprintf("CELL_PARAMETERS (angstroms)\n%s\n\nATOMIC_POSITIONS (crystal)\n%s", vectorsAsString, xyz_1.default.fromMaterial(materialOrConfig));
+    return underscore_string_1.default.sprintf("CELL_PARAMETERS (angstroms)\n%s\n\nATOMIC_POSITIONS (crystal)\n%s", vectorsAsString, xyz_1.default.fromMaterial(materialOrConfig, false, constraints));
 }
 exports.default = {
     toEspressoFormat,
diff --git a/dist/js/parsers/native_format_parsers.d.ts b/dist/js/parsers/native_format_parsers.d.ts
index d9515f45c..49da3e5c9 100644
--- a/dist/js/parsers/native_format_parsers.d.ts
+++ b/dist/js/parsers/native_format_parsers.d.ts
@@ -1,17 +1,18 @@
+import { type MaterialSchemaWithConstraints } from "./poscar";
 /**
  * @summary Detects the format of the input string
- * @throws {Error} - If the input string is unknown format
- * @param {string} text -  input string to detect format
- * @returns {NATIVE_FORMAT} - Format of the input string
+ * @throws If the input string is unknown format
+ * @param text input string to detect format
+ * @returns Format of the input string
  */
-declare function detectFormat(text: string): string;
+declare function detectFormat(text: string): "json" | "poscar" | "unknown";
 /**
  * @summary Function to handle conversion from native formats
- * @param {String} text - input string to detect format and convert
- * @throws {Error} - If the input string is of unknown format
- * @return {Object} - Material config
+ * @param text - input string to detect format and convert
+ * @throws If the input string is of unknown format
+ * @return Material config
  */
-declare function convertFromNativeFormat(text: string): any;
+declare function convertFromNativeFormat(text: string): MaterialSchemaWithConstraints;
 declare const _default: {
     detectFormat: typeof detectFormat;
     convertFromNativeFormat: typeof convertFromNativeFormat;
diff --git a/dist/js/parsers/native_format_parsers.js b/dist/js/parsers/native_format_parsers.js
index 0f0322fc1..7907e0ddc 100644
--- a/dist/js/parsers/native_format_parsers.js
+++ b/dist/js/parsers/native_format_parsers.js
@@ -14,9 +14,9 @@ const NATIVE_FORMAT = {
 };
 /**
  * @summary Detects the format of the input string
- * @throws {Error} - If the input string is unknown format
- * @param {string} text -  input string to detect format
- * @returns {NATIVE_FORMAT} - Format of the input string
+ * @throws If the input string is unknown format
+ * @param text input string to detect format
+ * @returns Format of the input string
  */
 function detectFormat(text) {
     const jsonRegex = /^\s*\{/;
@@ -28,9 +28,9 @@ function detectFormat(text) {
 }
 /**
  * @summary Function to handle conversion from native formats
- * @param {String} text - input string to detect format and convert
- * @throws {Error} - If the input string is of unknown format
- * @return {Object} - Material config
+ * @param text - input string to detect format and convert
+ * @throws If the input string is of unknown format
+ * @return Material config
  */
 function convertFromNativeFormat(text) {
     const format = detectFormat(text);
diff --git a/dist/js/parsers/parsers.d.ts b/dist/js/parsers/parsers.d.ts
index d4c300a5d..48a1e202f 100644
--- a/dist/js/parsers/parsers.d.ts
+++ b/dist/js/parsers/parsers.d.ts
@@ -1,15 +1,15 @@
 declare const _default: {
     xyz: {
         validate: typeof import("./xyz").validate;
-        fromMaterial: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema, fractional?: boolean) => string;
+        fromMaterial: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema, fractional?: boolean, constraints?: import("@mat3ra/esse/dist/js/types").AtomicConstraintsSchema) => string;
         toBasisConfig: (txt: string, units?: string, cell?: import("../made").Cell) => import("../basis/constrained_basis").ConstrainedBasisConfig;
         fromBasis: (basisClsInstance: import("../basis/constrained_basis").ConstrainedBasis, coordinatePrintFormat: string) => string;
         CombinatorialBasis: typeof import("./xyz_combinatorial_basis").CombinatorialBasis;
     };
     poscar: {
         isPoscar: (text: string) => boolean;
-        toPoscar: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema, omitConstraints?: boolean) => string;
-        fromPoscar: (fileContent: string) => object;
+        toPoscar: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema, constraints?: import("@mat3ra/esse/dist/js/types").AtomicConstraintsSchema, omitConstraints?: boolean) => string;
+        fromPoscar: (fileContent: string) => import("./poscar").MaterialSchemaWithConstraints;
         atomicConstraintsCharFromBool: (bool: boolean) => string;
         atomsCount: typeof import("./poscar").atomsCount;
     };
@@ -17,11 +17,11 @@ declare const _default: {
         parseMeta: (txt: string) => import("./cif").Meta;
     };
     espresso: {
-        toEspressoFormat: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema) => string;
+        toEspressoFormat: (materialOrConfig: import("@mat3ra/esse/dist/js/types").MaterialSchema, constraints?: import("@mat3ra/esse/dist/js/types").AtomicConstraintsSchema) => string;
     };
     nativeFormatParsers: {
-        detectFormat: (text: string) => string;
-        convertFromNativeFormat: (text: string) => any;
+        detectFormat: (text: string) => "json" | "poscar" | "unknown";
+        convertFromNativeFormat: (text: string) => import("./poscar").MaterialSchemaWithConstraints;
     };
 };
 export default _default;
diff --git a/dist/js/parsers/poscar.d.ts b/dist/js/parsers/poscar.d.ts
index 9b8a4f09d..b33ac4ebd 100644
--- a/dist/js/parsers/poscar.d.ts
+++ b/dist/js/parsers/poscar.d.ts
@@ -1,21 +1,26 @@
-import { MaterialSchema } from "@mat3ra/esse/dist/js/types";
+import { AtomicConstraintsSchema, MaterialSchema } from "@mat3ra/esse/dist/js/types";
 /**
  * Obtain a textual representation of a material in POSCAR format.
- * @param materialOrConfig - material class instance or config object.
- * @param omitConstraints - whether to discard constraints passed with material.
+ * @param materialOrConfig - material class instance or config object (ESSE basis; no constraints).
+ * @param constraints - atomic constraints, separate from material config.
+ * @param omitConstraints - whether to discard constraints when serializing.
  */
-declare function toPoscar(materialOrConfig: MaterialSchema, omitConstraints?: boolean): string;
+declare function toPoscar(materialOrConfig: MaterialSchema, constraints?: AtomicConstraintsSchema, omitConstraints?: boolean): string;
 /**
  * @summary calculates the number of atoms in a poscar file based on the summation of the numbers in line 7 of the file.
  * Poscar file formatting: https://www.vasp.at/wiki/index.php/POSCAR
  */
 export declare function atomsCount(poscarFileContent: string): number;
+export type MaterialSchemaWithConstraints = Omit<MaterialSchema, "metadata"> & {
+    metadata?: MaterialSchema["metadata"];
+    constraints?: AtomicConstraintsSchema;
+};
 /**
  * Parses POSCAR file into a Material config object.
  * @param fileContent - POSCAR file content.
  * @return Material config.
  */
-declare function fromPoscar(fileContent: string): object;
+declare function fromPoscar(fileContent: string): MaterialSchemaWithConstraints;
 /**
  * @summary Checks if a string has a POSCAR format (first 8 lines are read)
  * @param text - string to check
diff --git a/dist/js/parsers/poscar.js b/dist/js/parsers/poscar.js
index 54678d9e2..fd9b577e5 100644
--- a/dist/js/parsers/poscar.js
+++ b/dist/js/parsers/poscar.js
@@ -15,16 +15,17 @@ const _latticeVectorsToString = (vectors) => vectors.map((v) => v.map((c) => _pr
 const atomicConstraintsCharFromBool = (bool) => (bool ? "T" : "F");
 /**
  * Obtain a textual representation of a material in POSCAR format.
- * @param materialOrConfig - material class instance or config object.
- * @param omitConstraints - whether to discard constraints passed with material.
+ * @param materialOrConfig - material class instance or config object (ESSE basis; no constraints).
+ * @param constraints - atomic constraints, separate from material config.
+ * @param omitConstraints - whether to discard constraints when serializing.
  */
-function toPoscar(materialOrConfig, omitConstraints = false) {
+function toPoscar(materialOrConfig, constraints = [], omitConstraints = false) {
     const lattice = new lattice_1.Lattice(materialOrConfig.lattice);
     const vectorsAsString = _latticeVectorsToString(lattice.vectorArrays);
-    // @ts-ignore
     const basis = new constrained_basis_1.ConstrainedBasis({
         ...materialOrConfig.basis,
         cell: cell_1.Cell.fromVectorsArray(lattice.vectorArrays),
+        constraints: omitConstraints ? [] : constraints,
     });
     const BasisLines = [];
     let addSelectiveDynamics = false;
@@ -131,11 +132,14 @@ function fromPoscar(fileContent) {
         cell: cell_1.Cell.fromVectorsArray(lattice.vectorArrays),
         constraints,
     });
+    const basisJson = basis.toJSON();
+    const { constraints: atomicConstraints, ...basisWithoutConstraints } = basisJson;
     const materialConfig = {
         lattice: lattice.toJSON(),
-        basis: basis.toJSON(),
+        basis: basisWithoutConstraints,
         name: comment,
         isNonPeriodic: false,
+        ...((atomicConstraints === null || atomicConstraints === void 0 ? void 0 : atomicConstraints.length) ? { constraints: atomicConstraints } : {}),
     };
     return materialConfig;
 }
diff --git a/dist/js/parsers/xyz.d.ts b/dist/js/parsers/xyz.d.ts
index ea2af8c04..dd88df929 100644
--- a/dist/js/parsers/xyz.d.ts
+++ b/dist/js/parsers/xyz.d.ts
@@ -1,4 +1,4 @@
-import { MaterialSchema } from "@mat3ra/esse/dist/js/types";
+import { AtomicConstraintsSchema, MaterialSchema } from "@mat3ra/esse/dist/js/types";
 import { ConstrainedBasis, ConstrainedBasisConfig } from "../basis/constrained_basis";
 import { AtomicCoordinateValue } from "../basis/coordinates";
 import { AtomicElementValue } from "../basis/elements";
@@ -32,11 +32,10 @@ declare function toBasisConfig(txt: string, units?: string, cell?: Cell): Constr
 declare function fromBasis(basisClsInstance: ConstrainedBasis, coordinatePrintFormat: string): string;
 /**
  * Create XYZ from Material class instance (or its JSON config).
- * @param materialOrConfig Material.
- * @param fractional Coordinate units as fractional.
- * @return Class Instance
+ * Constraints are not part of ESSE basis — pass them separately.
+ * Prefer fromBasis when you already have a ConstrainedBasis instance.
  */
-declare function fromMaterial(materialOrConfig: MaterialSchema, fractional?: boolean): string;
+declare function fromMaterial(materialOrConfig: MaterialSchema, fractional?: boolean, constraints?: AtomicConstraintsSchema): string;
 declare const _default: {
     validate: typeof validate;
     fromMaterial: typeof fromMaterial;
diff --git a/dist/js/parsers/xyz.js b/dist/js/parsers/xyz.js
index f8a7d8d64..55a55c377 100644
--- a/dist/js/parsers/xyz.js
+++ b/dist/js/parsers/xyz.js
@@ -132,16 +132,15 @@ function fromBasis(basisClsInstance, coordinatePrintFormat) {
 }
 /**
  * Create XYZ from Material class instance (or its JSON config).
- * @param materialOrConfig Material.
- * @param fractional Coordinate units as fractional.
- * @return Class Instance
+ * Constraints are not part of ESSE basis — pass them separately.
+ * Prefer fromBasis when you already have a ConstrainedBasis instance.
  */
-function fromMaterial(materialOrConfig, fractional = false) {
+function fromMaterial(materialOrConfig, fractional = false, constraints = []) {
     const lattice = new lattice_1.Lattice(materialOrConfig.lattice);
-    // @ts-ignore
     const basis = new constrained_basis_1.ConstrainedBasis({
         ...materialOrConfig.basis,
         cell: cell_1.Cell.fromVectorsArray(lattice.vectorArrays),
+        constraints,
     });
     if (fractional) {
         basis.toCrystal();
diff --git a/dist/js/parsers/xyz_combinatorial_basis.js b/dist/js/parsers/xyz_combinatorial_basis.js
index a50ef0acf..149f09918 100644
--- a/dist/js/parsers/xyz_combinatorial_basis.js
+++ b/dist/js/parsers/xyz_combinatorial_basis.js
@@ -209,7 +209,9 @@ class CombinatorialBasis {
             dimensions.push(itemsSet);
         });
         // @ts-ignore // We're multiplying objects with math, not numbers. No type casting will help.
-        const basisSet = utils_1.Utils.math.cartesianProduct.apply(null, dimensions);
+        const basisSet = utils_1.Utils.math.cartesianProduct.apply(null, 
+        // @ts-ignore
+        dimensions);
         return basisSet.map((basis) => basis.filter((entry) => entry.element !== VACANCY_CHARACTER));
     }
     /**
diff --git a/dist/js/tools/basis.d.ts b/dist/js/tools/basis.d.ts
index 9a9ef2628..c6d9cc72a 100644
--- a/dist/js/tools/basis.d.ts
+++ b/dist/js/tools/basis.d.ts
@@ -14,7 +14,7 @@ declare function repeat(basis: Basis, repetitions: number[]): Basis;
  * @param numberOfSteps{Number} Number of intermediate steps.
  * @return {Basis[]} List of all bases.
  */
-declare function interpolate(initialBasis: Basis, finalBasis: Basis, numberOfSteps?: number): Basis[];
+declare function interpolate(initialBasis: Basis, finalBasis: Basis, numberOfSteps?: number): Basis<import("../basis/basis").BasisConfig>[];
 declare const _default: {
     repeat: typeof repeat;
     interpolate: typeof interpolate;
diff --git a/dist/js/tools/index.d.ts b/dist/js/tools/index.d.ts
index 0b4db4823..6c6daf413 100644
--- a/dist/js/tools/index.d.ts
+++ b/dist/js/tools/index.d.ts
@@ -1,11 +1,11 @@
 declare const _default: {
     surface: {
-        generateConfig: (material: import("../material").Material, millerIndices: import("@mat3ra/esse/dist/js/types").Coordinate3DSchema, numberOfLayers?: number, vx?: number, vy?: number) => import("./surface").SlabConfigSchema;
+        generateConfig: <S extends import("@mat3ra/esse/dist/js/types").MaterialSchema = import("@mat3ra/esse/dist/js/types").MaterialSchema>(material: import("../material").Material<S>, millerIndices: import("@mat3ra/esse/dist/js/types").Coordinate3DSchema, numberOfLayers?: number, vx?: number, vy?: number) => import("./surface").SlabConfigSchema;
     };
     supercell: {
-        generateConfig: (material: import("../material").Material, supercellMatrix: import("@mat3ra/esse/dist/js/types").Matrix3X3Schema) => {
+        generateConfig: <S extends import("@mat3ra/esse/dist/js/types").MaterialSchema = import("@mat3ra/esse/dist/js/types").MaterialSchema>(material: import("../material").Material<S>, supercellMatrix: import("@mat3ra/esse/dist/js/types").Matrix3X3Schema) => {
             name: string;
-            basis: import("@mat3ra/esse/dist/js/types").BasisSchema;
+            basis: import("../basis/basis").BasisConfig & import("@mat3ra/esse/dist/js/types").BaseInMemoryEntitySchema;
             lattice: import("@mat3ra/esse/dist/js/types").LatticeSchema;
         };
         generateNewBasisWithinSupercell: (basis: import("../made").Basis | import("../basis/constrained_basis").ConstrainedBasis, cell: import("../made").Cell, supercell: import("../made").Cell, supercellMatrix: import("@mat3ra/esse/dist/js/types").Matrix3X3Schema) => import("../made").Basis;
@@ -17,7 +17,7 @@ declare const _default: {
     };
     basis: {
         repeat: (basis: import("../made").Basis, repetitions: number[]) => import("../made").Basis;
-        interpolate: (initialBasis: import("../made").Basis, finalBasis: import("../made").Basis, numberOfSteps?: number) => import("../made").Basis[];
+        interpolate: (initialBasis: import("../made").Basis, finalBasis: import("../made").Basis, numberOfSteps?: number) => import("../made").Basis<import("../basis/basis").BasisConfig>[];
     };
 };
 export default _default;
diff --git a/dist/js/tools/material.js b/dist/js/tools/material.js
index 61a2dbcf4..956e04c9a 100644
--- a/dist/js/tools/material.js
+++ b/dist/js/tools/material.js
@@ -15,7 +15,7 @@ function scaleOneLatticeVector(material, key = "a", factor = 1.0) {
         throw new Error("Lattice vectors are undefined");
     }
     lattice.vectors[key] = lattice.vectors[key].map((v) => v * factor);
-    material.lattice = lattice_1.Lattice.fromVectors(lattice.vectors).toJSON();
+    material.setLattice(lattice_1.Lattice.fromVectors(lattice.vectors).toJSON());
 }
 /**
  * Updates the size of a materials lattice using the minimumLatticeSize function.
@@ -23,10 +23,10 @@ function scaleOneLatticeVector(material, key = "a", factor = 1.0) {
  * @param material {Material}
  */
 function scaleLatticeToMakeNonPeriodic(material) {
-    material.lattice = lattice_1.Lattice.fromConfigPartial({
-        a: material.Basis.getMinimumLatticeSize(),
+    material.setLattice(lattice_1.Lattice.fromConfigPartial({
+        a: material.getBasis().getMinimumLatticeSize(),
         type: "CUB",
-    }).toJSON();
+    }).toJSON());
 }
 /**
  * Updates the basis of a material by translating the coordinates
@@ -34,11 +34,12 @@ function scaleLatticeToMakeNonPeriodic(material) {
  * @param material {Material}
  * */
 function translateAtomsToCenter(material) {
-    const originalUnits = material.Basis.units;
+    const basis = material.getBasis();
+    const originalUnits = basis.units;
     material.toCartesian();
-    const updatedBasis = material.Basis;
+    const updatedBasis = basis.toCartesian();
     const centerOfCoordinates = updatedBasis.centerOfCoordinatesPoint;
-    const centerOfLattice = utils_1.Utils.math.multiply(0.5, material.Lattice.vectorArrays.reduce((a, b) => utils_1.Utils.math.add(a, b)));
+    const centerOfLattice = utils_1.Utils.math.multiply(0.5, material.getLattice().vectorArrays.reduce((a, b) => utils_1.Utils.math.add(a, b)));
     const translationVector = utils_1.Utils.math.subtract(centerOfLattice, centerOfCoordinates);
     updatedBasis.translateByVector(translationVector);
     material.setBasis(updatedBasis.toJSON());
diff --git a/dist/js/tools/supercell.d.ts b/dist/js/tools/supercell.d.ts
index 0afac6c78..83b099ecc 100644
--- a/dist/js/tools/supercell.d.ts
+++ b/dist/js/tools/supercell.d.ts
@@ -1,4 +1,4 @@
-import { Matrix3X3Schema } from "@mat3ra/esse/dist/js/types";
+import { type MaterialSchema, Matrix3X3Schema } from "@mat3ra/esse/dist/js/types";
 import { Basis } from "../basis/basis";
 import { ConstrainedBasis } from "../basis/constrained_basis";
 import { Cell } from "../cell/cell";
@@ -9,12 +9,10 @@ import type { Material } from "../material";
 declare function generateNewBasisWithinSupercell(basis: Basis | ConstrainedBasis, cell: Cell, supercell: Cell, supercellMatrix: Matrix3X3Schema): Basis;
 /**
  * @summary Generates supercell config for the specified material.
- * @param material
- * @param supercellMatrix {Number[][]}
  */
-declare function generateConfig(material: Material, supercellMatrix: Matrix3X3Schema): {
+declare function generateConfig<S extends MaterialSchema = MaterialSchema>(material: Material<S>, supercellMatrix: Matrix3X3Schema): {
     name: string;
-    basis: import("@mat3ra/esse/dist/js/types").BasisSchema;
+    basis: import("../basis/basis").BasisConfig & import("@mat3ra/esse/dist/js/types").BaseInMemoryEntitySchema;
     lattice: import("@mat3ra/esse/dist/js/types").LatticeSchema;
 };
 declare const _default: {
diff --git a/dist/js/tools/supercell.js b/dist/js/tools/supercell.js
index 522bc4bc0..e9ef16801 100644
--- a/dist/js/tools/supercell.js
+++ b/dist/js/tools/supercell.js
@@ -35,17 +35,15 @@ function generateNewBasisWithinSupercell(basis, cell, supercell, supercellMatrix
 }
 /**
  * @summary Generates supercell config for the specified material.
- * @param material
- * @param supercellMatrix {Number[][]}
  */
 function generateConfig(material, supercellMatrix) {
     const det = utils_1.Utils.math.det(supercellMatrix);
     if (det === 0) {
         throw new Error("Scaling matrix is degenerate.");
     }
-    const cell = material.Lattice.vectors;
+    const cell = material.getLattice().vectors;
     const supercell = cell.cloneAndScaleByMatrix(supercellMatrix);
-    const newBasis = generateNewBasisWithinSupercell(material.Basis, cell, supercell, supercellMatrix);
+    const newBasis = generateNewBasisWithinSupercell(material.getBasis(), cell, supercell, supercellMatrix);
     const newLattice = lattice_1.Lattice.fromVectors({
         a: supercell.a,
         b: supercell.b,
diff --git a/dist/js/tools/surface.d.ts b/dist/js/tools/surface.d.ts
index 56e4ad1ad..7f2184520 100644
--- a/dist/js/tools/surface.d.ts
+++ b/dist/js/tools/surface.d.ts
@@ -1,9 +1,9 @@
-import { Coordinate3DSchema, MaterialSchema } from "@mat3ra/esse/dist/js/types";
-import { Material } from "../material";
-export type SlabConfigSchema = MaterialSchema & {
+import { type MaterialSchema, Coordinate3DSchema } from "@mat3ra/esse/dist/js/types";
+import { type MaterialConfig, Material } from "../material";
+export type SlabConfigSchema = MaterialConfig & {
     outOfPlaneAxisIndex: number;
 };
-declare function generateConfig(material: Material, millerIndices: Coordinate3DSchema, numberOfLayers?: number, vx?: number, vy?: number): SlabConfigSchema;
+declare function generateConfig<S extends MaterialSchema = MaterialSchema>(material: Material<S>, millerIndices: Coordinate3DSchema, numberOfLayers?: number, vx?: number, vy?: number): SlabConfigSchema;
 declare const _default: {
     generateConfig: typeof generateConfig;
 };
diff --git a/dist/js/tools/surface.js b/dist/js/tools/surface.js
index cbfdbc21e..ccd4c2a0d 100644
--- a/dist/js/tools/surface.js
+++ b/dist/js/tools/surface.js
@@ -135,7 +135,7 @@ function getDimensionsScalingMatrix(outOfPlaneAxisIndex, thickness, vx, vy) {
 function generateConfig(material, millerIndices, numberOfLayers = 1, vx = 1, vy = 1) {
     if (numberOfLayers < 1)
         throw new Error("Made.tools.surface.generateConfig: number of layers < 1.");
-    const cell = material.Lattice.vectors;
+    const cell = material.getLattice().vectors;
     const millerScalingMatrix = getMillerScalingMatrix(cell, millerIndices);
     const millerSupercell = cell.cloneAndScaleByMatrix(millerScalingMatrix);
     const millerPlanePseudoNormal = cell.convertPointToCartesian(millerIndices);
@@ -143,7 +143,7 @@ function generateConfig(material, millerIndices, numberOfLayers = 1, vx = 1, vy
     const dimensionsScalingMatrix = getDimensionsScalingMatrix(outOfPlaneAxisIndex, numberOfLayers, vx, vy);
     const supercellMatrix = MULT(dimensionsScalingMatrix, millerScalingMatrix);
     const supercell = millerSupercell.cloneAndScaleByMatrix(dimensionsScalingMatrix);
-    const tempBasis = material.Basis.clone();
+    const tempBasis = material.getBasis().clone();
     const newBasis = supercell_1.default.generateNewBasisWithinSupercell(tempBasis, cell, supercell, supercellMatrix);
     const newLattice = lattice_1.Lattice.fromVectors({
         a: supercell.vectorArrays[0],
diff --git a/package-lock.json b/package-lock.json
index 6a1937592..5ae0e371e 100644
--- a/package-lock.json
+++ b/package-lock.json
@@ -31,8 +31,8 @@
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-                "@mat3ra/esse": "^2026.6.30-0",
+                "@mat3ra/code": "https://github.com/Exabyte-io/code/archive/923890274d775e36904674ceed755c9c542cf201.tar.gz",
+                "@mat3ra/esse": "https://github.com/mat3ra/esse/archive/de8538cf2bd31bdcc240c209f78ab42811add289.tar.gz",
                 "@mat3ra/standata": "2026.6.30-0",
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@@ -69,6 +69,14 @@
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@@ -102,18 +110,19 @@
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             "license": "MIT",
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-                "convert-source-map": "^1.1.0",
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@@ -124,17 +133,21 @@
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-            "license": "MIT"
+        "node_modules/@babel/cli/node_modules/commander": {
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+            "resolved": "https://registry.npmjs.org/commander/-/commander-6.2.1.tgz",
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+            "dev": true,
+            "license": "MIT",
+            "engines": {
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+            }
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@@ -189,6 +202,14 @@
                 "url": "https://opencollective.com/babel"
             }
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+            "resolved": "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz",
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+            "bin": {
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             "resolved": "https://registry.npmjs.org/@babel/eslint-parser/-/eslint-parser-7.29.7.tgz",
@@ -208,6 +229,15 @@
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+            "resolved": "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz",
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+            "dev": true,
+            "bin": {
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             "resolved": "https://registry.npmjs.org/@babel/generator/-/generator-7.29.7.tgz",
@@ -252,6 +282,14 @@
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+            "resolved": "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz",
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+            "bin": {
+                "semver": "bin/semver.js"
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@@ -273,6 +311,14 @@
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+            "version": "6.3.1",
+            "resolved": "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz",
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+            "bin": {
+                "semver": "bin/semver.js"
+            }
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@@ -290,6 +336,14 @@
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+        "node_modules/@babel/helper-create-regexp-features-plugin/node_modules/semver": {
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+            "resolved": "https://registry.npmjs.org/semver/-/semver-6.3.1.tgz",
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+            "bin": {
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@@ -753,7 +727,6 @@
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@@ -804,7 +775,6 @@
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@@ -855,7 +823,6 @@
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@@ -875,7 +842,6 @@
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@@ -892,7 +858,6 @@
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                 "uuid": "dist/bin/uuid"
             }
@@ -11878,8 +11620,7 @@
         "node_modules/v8-compile-cache": {
             "version": "2.4.0",
             "resolved": "https://registry.npmjs.org/v8-compile-cache/-/v8-compile-cache-2.4.0.tgz",
-            "integrity": "sha512-ocyWc3bAHBB/guyqJQVI5o4BZkPhznPYUG2ea80Gond/BgNWpap8TOmLSeeQG7bnh2KMISxskdADG59j7zruhw==",
-            "license": "MIT"
+            "integrity": "sha512-ocyWc3bAHBB/guyqJQVI5o4BZkPhznPYUG2ea80Gond/BgNWpap8TOmLSeeQG7bnh2KMISxskdADG59j7zruhw=="
         },
         "node_modules/v8-compile-cache-lib": {
             "version": "3.0.1",
@@ -11897,8 +11638,7 @@
             "version": "1.0.6",
             "resolved": "https://registry.npmjs.org/validate.io-array/-/validate.io-array-1.0.6.tgz",
             "integrity": "sha512-DeOy7CnPEziggrOO5CZhVKJw6S3Yi7e9e65R1Nl/RTN1vTQKnzjfvks0/8kQ40FP/dsjRAOd4hxmJ7uLa6vxkg==",
-            "dev": true,
-            "license": "MIT"
+            "dev": true
         },
         "node_modules/validate.io-function": {
             "version": "1.0.2",
@@ -11935,7 +11675,6 @@
             "version": "2.0.2",
             "resolved": "https://registry.npmjs.org/which/-/which-2.0.2.tgz",
             "integrity": "sha512-BLI3Tl1TW3Pvl70l3yq3Y64i+awpwXqsGBYWkkqMtnbXgrMD+yj7rhW0kuEDxzJaYXGjEW5ogapKNMEKNMjibA==",
-            "license": "ISC",
             "dependencies": {
                 "isexe": "^2.0.0"
             },
@@ -12017,8 +11756,7 @@
             "version": "2.0.1",
             "resolved": "https://registry.npmjs.org/which-module/-/which-module-2.0.1.tgz",
             "integrity": "sha512-iBdZ57RDvnOR9AGBhML2vFZf7h8vmBjhoaZqODJBFWHVtKkDmKuHai3cx5PgVMrX5YDNp27AofYbAwctSS+vhQ==",
-            "dev": true,
-            "license": "ISC"
+            "dev": true
         },
         "node_modules/which-typed-array": {
             "version": "1.1.22",
@@ -12042,15 +11780,6 @@
                 "url": "https://github.com/sponsors/ljharb"
             }
         },
-        "node_modules/word-wrap": {
-            "version": "1.2.5",
-            "resolved": "https://registry.npmjs.org/word-wrap/-/word-wrap-1.2.5.tgz",
-            "integrity": "sha512-BN22B5eaMMI9UMtjrGd5g5eCYPpCPDUy0FJXbYsaT5zYxjFOckS53SQDE3pWkVoWpHXVb3BrYcEN4Twa55B5cA==",
-            "license": "MIT",
-            "engines": {
-                "node": ">=0.10.0"
-            }
-        },
         "node_modules/workerpool": {
             "version": "6.5.1",
             "resolved": "https://registry.npmjs.org/workerpool/-/workerpool-6.5.1.tgz",
@@ -12063,7 +11792,6 @@
             "resolved": "https://registry.npmjs.org/wrap-ansi/-/wrap-ansi-7.0.0.tgz",
             "integrity": "sha512-YVGIj2kamLSTxw6NsZjoBxfSwsn0ycdesmc4p+Q21c5zPuZ1pl+NfxVdxPtdHvmNVOQ6XSYG4AUtyt/Fi7D16Q==",
             "dev": true,
-            "license": "MIT",
             "dependencies": {
                 "ansi-styles": "^4.0.0",
                 "string-width": "^4.1.0",
@@ -12076,50 +11804,49 @@
                 "url": "https://github.com/chalk/wrap-ansi?sponsor=1"
             }
         },
-        "node_modules/wrap-ansi/node_modules/emoji-regex": {
-            "version": "8.0.0",
-            "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz",
-            "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==",
-            "dev": true,
-            "license": "MIT"
-        },
-        "node_modules/wrap-ansi/node_modules/is-fullwidth-code-point": {
-            "version": "3.0.0",
-            "resolved": "https://registry.npmjs.org/is-fullwidth-code-point/-/is-fullwidth-code-point-3.0.0.tgz",
-            "integrity": "sha512-zymm5+u+sCsSWyD9qNaejV3DFvhCKclKdizYaJUuHA83RLjb7nSuGnddCHGv0hk+KY7BMAlsWeK4Ueg6EV6XQg==",
+        "node_modules/wrap-ansi/node_modules/ansi-styles": {
+            "version": "4.3.0",
+            "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-4.3.0.tgz",
+            "integrity": "sha512-zbB9rCJAT1rbjiVDb2hqKFHNYLxgtk8NURxZ3IZwD3F6NtxbXZQCnnSi1Lkx+IDohdPlFp222wVALIheZJQSEg==",
             "dev": true,
-            "license": "MIT",
+            "dependencies": {
+                "color-convert": "^2.0.1"
+            },
             "engines": {
                 "node": ">=8"
+            },
+            "funding": {
+                "url": "https://github.com/chalk/ansi-styles?sponsor=1"
             }
         },
-        "node_modules/wrap-ansi/node_modules/string-width": {
-            "version": "4.2.3",
-            "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
-            "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
+        "node_modules/wrap-ansi/node_modules/color-convert": {
+            "version": "2.0.1",
+            "resolved": "https://registry.npmjs.org/color-convert/-/color-convert-2.0.1.tgz",
+            "integrity": "sha512-RRECPsj7iu/xb5oKYcsFHSppFNnsj/52OVTRKb4zP5onXwVF3zVmmToNcOfGC+CRDpfK/U584fMg38ZHCaElKQ==",
             "dev": true,
-            "license": "MIT",
             "dependencies": {
-                "emoji-regex": "^8.0.0",
-                "is-fullwidth-code-point": "^3.0.0",
-                "strip-ansi": "^6.0.1"
+                "color-name": "~1.1.4"
             },
             "engines": {
-                "node": ">=8"
+                "node": ">=7.0.0"
             }
         },
+        "node_modules/wrap-ansi/node_modules/color-name": {
+            "version": "1.1.4",
+            "resolved": "https://registry.npmjs.org/color-name/-/color-name-1.1.4.tgz",
+            "integrity": "sha512-dOy+3AuW3a2wNbZHIuMZpTcgjGuLU/uBL/ubcZF9OXbDo8ff4O8yVp5Bf0efS8uEoYo5q4Fx7dY9OgQGXgAsQA==",
+            "dev": true
+        },
         "node_modules/wrappy": {
             "version": "1.0.2",
             "resolved": "https://registry.npmjs.org/wrappy/-/wrappy-1.0.2.tgz",
-            "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ==",
-            "license": "ISC"
+            "integrity": "sha512-l4Sp/DRseor9wL6EvV2+TuQn63dMkPjZ/sp9XkghTEbV9KlPS1xUsZ3u7/IQO4wxtcFB4bgpQPRcR3QCvezPcQ=="
         },
         "node_modules/write-file-atomic": {
             "version": "3.0.3",
             "resolved": "https://registry.npmjs.org/write-file-atomic/-/write-file-atomic-3.0.3.tgz",
             "integrity": "sha512-AvHcyZ5JnSfq3ioSyjrBkH9yW4m7Ayk8/9My/DD9onKeu/94fwrMocemO2QAJFAlnnDN+ZDS+ZjAR5ua1/PV/Q==",
             "dev": true,
-            "license": "ISC",
             "dependencies": {
                 "imurmurhash": "^0.1.4",
                 "is-typedarray": "^1.0.0",
@@ -12132,7 +11859,6 @@
             "resolved": "https://registry.npmjs.org/y18n/-/y18n-5.0.8.tgz",
             "integrity": "sha512-0pfFzegeDWJHJIAmTLRP2DwHjdF5s7jo9tuztdQxAhINCdvS+3nGINqPd00AphqJR/0LhANUS6/+7SCb98YOfA==",
             "dev": true,
-            "license": "ISC",
             "engines": {
                 "node": ">=10"
             }
@@ -12140,25 +11866,22 @@
         "node_modules/yallist": {
             "version": "3.1.1",
             "resolved": "https://registry.npmjs.org/yallist/-/yallist-3.1.1.tgz",
-            "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g==",
-            "license": "ISC"
+            "integrity": "sha512-a4UGQaWPH59mOXUYnAG2ewncQS4i4F43Tv3JoAM+s2VDAmS9NsK8GpDMLrCHPksFT7h3K6TOoUNn2pb7RoXx4g=="
         },
         "node_modules/yaml": {
-            "version": "1.10.3",
-            "resolved": "https://registry.npmjs.org/yaml/-/yaml-1.10.3.tgz",
-            "integrity": "sha512-vIYeF1u3CjlhAFekPPAk2h/Kv4T3mAkMox5OymRiJQB0spDP10LHvt+K7G9Ny6NuuMAb25/6n1qyUjAcGNf/AA==",
+            "version": "1.10.2",
+            "resolved": "https://registry.npmjs.org/yaml/-/yaml-1.10.2.tgz",
+            "integrity": "sha512-r3vXyErRCYJ7wg28yvBY5VSoAF8ZvlcW9/BwUzEtUsjvX/DKs24dIkuwjtuprwJJHsbyUbLApepYTR1BN4uHrg==",
             "dev": true,
-            "license": "ISC",
             "engines": {
                 "node": ">= 6"
             }
         },
         "node_modules/yargs": {
-            "version": "16.2.2",
-            "resolved": "https://registry.npmjs.org/yargs/-/yargs-16.2.2.tgz",
-            "integrity": "sha512-Nt9ZJjXTv5R8MHbqby/wXQ6Gi0Bb3TcYZkR1bzuL4yB2OxWPkXknz513gEF0GoA6tn00UpbPvERW8rzCuWCA6w==",
+            "version": "16.2.0",
+            "resolved": "https://registry.npmjs.org/yargs/-/yargs-16.2.0.tgz",
+            "integrity": "sha512-D1mvvtDG0L5ft/jGWkLpG1+m0eQxOfaBvTNELraWj22wSVUMWxZUvYgJYcKh6jGGIkJFhH4IZPQhR4TKpc8mBw==",
             "dev": true,
-            "license": "MIT",
             "dependencies": {
                 "cliui": "^7.0.2",
                 "escalade": "^3.1.1",
@@ -12187,7 +11910,6 @@
             "resolved": "https://registry.npmjs.org/yargs-unparser/-/yargs-unparser-2.0.0.tgz",
             "integrity": "sha512-7pRTIA9Qc1caZ0bZ6RYRGbHJthJWuakf+WmHK0rVeLkNrrGhfoabBNdue6kdINI6r4if7ocq9aD/n7xwKOdzOA==",
             "dev": true,
-            "license": "MIT",
             "dependencies": {
                 "camelcase": "^6.0.0",
                 "decamelize": "^4.0.0",
@@ -12198,64 +11920,6 @@
                 "node": ">=10"
             }
         },
-        "node_modules/yargs-unparser/node_modules/camelcase": {
-            "version": "6.3.0",
-            "resolved": "https://registry.npmjs.org/camelcase/-/camelcase-6.3.0.tgz",
-            "integrity": "sha512-Gmy6FhYlCY7uOElZUSbxo2UCDH8owEk996gkbrpsgGtrJLM3J7jGxl9Ic7Qwwj4ivOE5AWZWRMecDdF7hqGjFA==",
-            "dev": true,
-            "license": "MIT",
-            "engines": {
-                "node": ">=10"
-            },
-            "funding": {
-                "url": "https://github.com/sponsors/sindresorhus"
-            }
-        },
-        "node_modules/yargs-unparser/node_modules/decamelize": {
-            "version": "4.0.0",
-            "resolved": "https://registry.npmjs.org/decamelize/-/decamelize-4.0.0.tgz",
-            "integrity": "sha512-9iE1PgSik9HeIIw2JO94IidnE3eBoQrFJ3w7sFuzSX4DpmZ3v5sZpUiV5Swcf6mQEF+Y0ru8Neo+p+nyh2J+hQ==",
-            "dev": true,
-            "license": "MIT",
-            "engines": {
-                "node": ">=10"
-            },
-            "funding": {
-                "url": "https://github.com/sponsors/sindresorhus"
-            }
-        },
-        "node_modules/yargs/node_modules/emoji-regex": {
-            "version": "8.0.0",
-            "resolved": "https://registry.npmjs.org/emoji-regex/-/emoji-regex-8.0.0.tgz",
-            "integrity": "sha512-MSjYzcWNOA0ewAHpz0MxpYFvwg6yjy1NG3xteoqz644VCo/RPgnr1/GGt+ic3iJTzQ8Eu3TdM14SawnVUmGE6A==",
-            "dev": true,
-            "license": "MIT"
-        },
-        "node_modules/yargs/node_modules/is-fullwidth-code-point": {
-            "version": "3.0.0",
-            "resolved": "https://registry.npmjs.org/is-fullwidth-code-point/-/is-fullwidth-code-point-3.0.0.tgz",
-            "integrity": "sha512-zymm5+u+sCsSWyD9qNaejV3DFvhCKclKdizYaJUuHA83RLjb7nSuGnddCHGv0hk+KY7BMAlsWeK4Ueg6EV6XQg==",
-            "dev": true,
-            "license": "MIT",
-            "engines": {
-                "node": ">=8"
-            }
-        },
-        "node_modules/yargs/node_modules/string-width": {
-            "version": "4.2.3",
-            "resolved": "https://registry.npmjs.org/string-width/-/string-width-4.2.3.tgz",
-            "integrity": "sha512-wKyQRQpjJ0sIp62ErSZdGsjMJWsap5oRNihHhu6G7JVO/9jIB6UyevL+tXuOqrng8j/cxKTWyWUwvSTriiZz/g==",
-            "dev": true,
-            "license": "MIT",
-            "dependencies": {
-                "emoji-regex": "^8.0.0",
-                "is-fullwidth-code-point": "^3.0.0",
-                "strip-ansi": "^6.0.1"
-            },
-            "engines": {
-                "node": ">=8"
-            }
-        },
         "node_modules/yn": {
             "version": "3.1.1",
             "resolved": "https://registry.npmjs.org/yn/-/yn-3.1.1.tgz",
@@ -12270,7 +11934,6 @@
             "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz",
             "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==",
             "dev": true,
-            "license": "MIT",
             "engines": {
                 "node": ">=10"
             },
diff --git a/package.json b/package.json
index 5ca1a35f3..bb6f03458 100644
--- a/package.json
+++ b/package.json
@@ -34,11 +34,11 @@
         "@babel/register": "^7.29.7",
         "@babel/runtime-corejs3": "^7.29.7",
         "@exabyte-io/eslint-config": "^2026.7.3-0",
-        "@mat3ra/code": "^2026.5.27-0",
-        "@mat3ra/esse": "^2026.6.30-0",
+        "@mat3ra/code": "https://github.com/Exabyte-io/code/archive/923890274d775e36904674ceed755c9c542cf201.tar.gz",
+        "@mat3ra/esse": "https://github.com/mat3ra/esse/archive/de8538cf2bd31bdcc240c209f78ab42811add289.tar.gz",
+        "@mat3ra/standata": "2026.6.30-0",
         "@mat3ra/tsconfig": "^2024.6.3-0",
         "@mat3ra/utils": "^2026.7.8-0",
-        "@mat3ra/standata": "2026.6.30-0",
         "@types/crypto-js": "^4.2.2",
         "@typescript-eslint/eslint-plugin": "^5.62.0",
         "@typescript-eslint/parser": "^5.62.0",
@@ -60,8 +60,8 @@
         "husky": "^7.0.4",
         "lint-staged": "^12.5.0",
         "mocha": "10.8.2",
-        "prettier": "^2.8.8",
-        "nyc": "^15.1.0"
+        "nyc": "^15.1.0",
+        "prettier": "^2.8.8"
     },
     "dependencies": {
         "@babel/core": "^7.29.7",
diff --git a/scripts/generate-mixins.ts b/scripts/generate-mixins.ts
new file mode 100644
index 000000000..2b64d7a86
--- /dev/null
+++ b/scripts/generate-mixins.ts
@@ -0,0 +1,28 @@
+#!/usr/bin/env node
+
+/**
+ * Script to generate mixin properties from JSON schema.
+ *
+ * Usage:
+ *   npm run generate-mixins
+ */
+
+import generateSchemaMixin from "@mat3ra/code/dist/js/generateSchemaMixin";
+import allSchemas from "@mat3ra/esse/dist/js/schemas.json";
+import type { JSONSchema7 } from "json-schema";
+
+const SKIP_FIELDS: string[] = [];
+
+const OUTPUT_PATHS = {
+    "material/material-properties": "src/js/generated/MaterialSchemaMixin.ts",
+};
+
+function main() {
+    const result = generateSchemaMixin(allSchemas as JSONSchema7[], OUTPUT_PATHS, SKIP_FIELDS);
+
+    if (result.errorCount > 0) {
+        process.exit(1);
+    }
+}
+
+main();
diff --git a/src/js/basis/basis.ts b/src/js/basis/basis.ts
index 37d7e3ca2..2cd81dd72 100644
--- a/src/js/basis/basis.ts
+++ b/src/js/basis/basis.ts
@@ -1,13 +1,17 @@
 // @ts-ignore
 import { getElectronegativity, getElementAtomicRadius } from "@exabyte-io/periodic-table.js";
 import { InMemoryEntity } from "@mat3ra/code/dist/js/entity";
-import { BasisSchema, Coordinate3DSchema, Vector3DSchema } from "@mat3ra/esse/dist/js/types";
+import {
+    BaseInMemoryEntitySchema,
+    BasisSchema,
+    Coordinate3DSchema,
+    Vector3DSchema,
+} from "@mat3ra/esse/dist/js/types";
 import { Utils } from "@mat3ra/utils";
 import { chain, toPairs, uniq, values } from "lodash";
 
 import { Cell } from "../cell/cell";
 import { ATOMIC_COORD_UNITS, HASH_TOLERANCE } from "../constants";
-
 import {
     defaultNonPeriodicMinimumLatticeSize,
     diatomicLatticePaddingFactor,
@@ -72,7 +76,11 @@ const DEFAULT_BASIS_CONFIG = {
     units: "crystal",
 };
 
-export class Basis extends InMemoryEntity implements BasisSchema {
+type BasisEntitySchema<S extends BasisConfig = BasisConfig> = S & BaseInMemoryEntitySchema;
+
+// Keep `{` on same line as `implements` to satisfy brace-style (conflicts with Prettier multi-line heritage).
+// prettier-ignore
+export class Basis<S extends BasisConfig = BasisConfig> extends InMemoryEntity<BasisEntitySchema<S>> implements BasisSchema {
     static defaultConfig: BasisSchema = DEFAULT_BASIS_CONFIG as BasisSchema;
 
     units: BasisSchema["units"];
@@ -122,8 +130,9 @@ export class Basis extends InMemoryEntity implements BasisSchema {
         );
     }
 
-    constructor(config: BasisConfig = Basis.defaultConfig) {
-        super(config);
+    // NoInfer: keep default S (or an explicit type arg) instead of inferring S from the config literal.
+    constructor(config: NoInfer<S> = Basis.defaultConfig as NoInfer<S>) {
+        super(config as BasisEntitySchema<S>);
         const { elements, coordinates, units, labels } = config;
         this.cell = new Cell(config.cell);
         this.units = units || (ATOMIC_COORD_UNITS.crystal as BasisSchema["units"]);
@@ -156,20 +165,19 @@ export class Basis extends InMemoryEntity implements BasisSchema {
         this._labels = Labels.fromObjects(labels || []);
     }
 
-    // TODO: figure out how to override toJSON in the parent class with generic classes
-    // @ts-ignore
-    toJSON(exclude: string[] = ["cell"]): BasisSchema {
+    toJSON(
+        exclude: (keyof BasisEntitySchema<S>)[] = ["cell"] as (keyof BasisEntitySchema<S>)[],
+    ): BasisEntitySchema<S> {
         return {
             ...super.toJSON(exclude),
             elements: this.elements,
             coordinates: this.coordinates,
             units: this.units,
             ...(this.labels?.length ? { labels: this.labels } : {}),
-        };
+        } as BasisEntitySchema<S>;
     }
 
-    // @ts-ignore
-    override clone(): Basis {
+    override clone(): this {
         const instance = super.clone();
         instance.cell = this.cell.clone();
         return instance;
@@ -205,16 +213,18 @@ export class Basis extends InMemoryEntity implements BasisSchema {
         return this.units === ATOMIC_COORD_UNITS.crystal;
     }
 
-    toCartesian(): void {
-        if (this.isInCartesianUnits) return;
+    toCartesian() {
+        if (this.isInCartesianUnits) return this;
         this._coordinates.mapArrayInPlace((point) => this.cell.convertPointToCartesian(point));
         this.units = ATOMIC_COORD_UNITS.cartesian as BasisSchema["units"];
+        return this;
     }
 
-    toCrystal(): void {
-        if (this.isInCrystalUnits) return;
+    toCrystal() {
+        if (this.isInCrystalUnits) return this;
         this._coordinates.mapArrayInPlace((point) => this.cell.convertPointToCrystal(point));
         this.units = ATOMIC_COORD_UNITS.crystal as BasisSchema["units"];
+        return this;
     }
 
     getElementByIndex(idx: number): AtomicElementValue {
@@ -393,7 +403,9 @@ export class Basis extends InMemoryEntity implements BasisSchema {
             const element = entry[0];
             const coordinate = entry[1];
             const atomicLabel = entry[2];
-            const toleratedCoordinate = coordinate.map((x) => Utils.math.roundCustom(x, HASH_TOLERANCE));
+            const toleratedCoordinate = coordinate.map((x) =>
+                Utils.math.roundCustom(x, HASH_TOLERANCE),
+            );
             return `${element}${atomicLabel} ${toleratedCoordinate.join()}`;
         });
         return `${standardRep.sort().join(";")};`;
@@ -416,7 +428,7 @@ export class Basis extends InMemoryEntity implements BasisSchema {
 
     /* Returns array of atomic labels E.g., ["1", "2", "", ""] */
     get atomicLabelsArray(): string[] {
-        const labelsArray = Array.from({ length: this.elements.length }, (_) => "");
+        const labelsArray = Array.from({ length: this.elements.length }, () => "");
         // https://dev.to/maafaishal/benchmarking-for-while-forof-and-arrayforeach-using-performancenow-1jjg
         if (this.labels?.length) {
             for (let i = 0; i < this.labels.length; i++) {
@@ -461,7 +473,7 @@ export class Basis extends InMemoryEntity implements BasisSchema {
      * @summary Returns true if bases are equal, otherwise - false.
      * @param anotherBasisClsInstance {Basis} Another Basis.
      */
-    isEqualTo(anotherBasisClsInstance: Basis): boolean {
+    isEqualTo(anotherBasisClsInstance: { hashString: string }): boolean {
         return this.hashString === anotherBasisClsInstance.hashString;
     }
 
@@ -469,7 +481,7 @@ export class Basis extends InMemoryEntity implements BasisSchema {
      * @summary Returns true if basis cells are equal, otherwise - false.
      * @param anotherBasisClsInstance {Basis} Another Basis.
      */
-    hasEquivalentCellTo(anotherBasisClsInstance: Basis): boolean {
+    hasEquivalentCellTo(anotherBasisClsInstance: { cell: Cell }): boolean {
         return !this.cell.vectorArrays
             .map((vector, idx) => {
                 return Utils.math.vEqualWithTolerance(
@@ -576,12 +588,13 @@ export class Basis extends InMemoryEntity implements BasisSchema {
                         this._coordinates.getElementValueByIndex(i) as Coordinate3DSchema,
                         this._coordinates.getElementValueByIndex(j) as Coordinate3DSchema,
                     );
-                    if (!distance) continue;
-                    if (extremum === "max" && distance > resultDistance) {
-                        resultDistance = distance;
-                    }
-                    if (extremum === "min" && distance < resultDistance) {
-                        resultDistance = distance;
+                    if (distance) {
+                        if (extremum === "max" && distance > resultDistance) {
+                            resultDistance = distance;
+                        }
+                        if (extremum === "min" && distance < resultDistance) {
+                            resultDistance = distance;
+                        }
                     }
                 }
             }
diff --git a/src/js/basis/constrained_basis.ts b/src/js/basis/constrained_basis.ts
index 4945cd9df..79a7f2c9c 100644
--- a/src/js/basis/constrained_basis.ts
+++ b/src/js/basis/constrained_basis.ts
@@ -8,7 +8,7 @@ import { ElementWithLabel } from "./helpers";
 import { AtomicLabelValue } from "./labels";
 
 export interface ConstrainedBasisConfig extends BasisConfig {
-    constraints: AtomicConstraintsSchema;
+    constraints?: AtomicConstraintsSchema;
 }
 
 export interface ElementsCoordinatesAndConstraintsConfig extends ElementsAndCoordinatesConfig {
@@ -19,13 +19,12 @@ export interface ElementsCoordinatesAndConstraintsConfig extends ElementsAndCoor
  * @summary Extension of the Basis class able to deal with atomic constraints.
  * @extends Basis
  */
-export class ConstrainedBasis extends Basis {
-    _constraints: AtomicConstraints;
+export class ConstrainedBasis extends Basis<ConstrainedBasisConfig> {
+    private _constraints: AtomicConstraints;
 
     constructor(config: ConstrainedBasisConfig) {
         super(config);
-        const { constraints } = config;
-        this._constraints = AtomicConstraints.fromObjects(constraints || []); // `constraints` is an Array with ids
+        this._constraints = AtomicConstraints.fromObjects(config.constraints ?? []); // `constraints` is an Array with ids
     }
 
     static fromElementsCoordinatesAndConstraints(
@@ -51,9 +50,9 @@ export class ConstrainedBasis extends Basis {
         return AtomicConstraints.fromObjects(this.constraints);
     }
 
-    override toJSON(): ConstrainedBasisConfig {
+    override toJSON(exclude: (keyof ConstrainedBasisConfig)[] = ["cell"]): ConstrainedBasisConfig {
         return {
-            ...super.toJSON(),
+            ...super.toJSON(exclude as (keyof ConstrainedBasisConfig)[]),
             constraints: this.constraints,
         };
     }
@@ -75,7 +74,7 @@ export class ConstrainedBasis extends Basis {
         AtomicCoordinateValue,
         AtomicConstraintValue,
     ][] {
-        return this._elements.values.map((element: any, idx: number) => {
+        return this._elements.values.map((element: AtomicElementValue, idx: number) => {
             const coordinate = this.getCoordinateValueByIndex(idx);
             const constraint = this.getConstraintByIndex(idx);
             const label = this.atomicLabelsArray[idx];
diff --git a/src/js/basis/coordinates.ts b/src/js/basis/coordinates.ts
index 760095cf8..9127aee27 100644
--- a/src/js/basis/coordinates.ts
+++ b/src/js/basis/coordinates.ts
@@ -8,7 +8,6 @@ import {
 import { Utils } from "@mat3ra/utils";
 import { sprintf } from "underscore.string";
 
-
 export type AtomicCoordinateValue = AtomicCoordinateSchema["value"];
 
 type AxisType = "x" | "y" | "z";
diff --git a/src/js/cell/cell.ts b/src/js/cell/cell.ts
index 83c514729..811f1b7d2 100644
--- a/src/js/cell/cell.ts
+++ b/src/js/cell/cell.ts
@@ -9,7 +9,6 @@ import { Utils } from "@mat3ra/utils";
 
 import constants from "../constants";
 
-
 const MATRIX = Utils.math.matrix;
 const MULT = Utils.math.multiply;
 const INV = Utils.math.inv;
diff --git a/src/js/generated/MaterialSchemaMixin.ts b/src/js/generated/MaterialSchemaMixin.ts
new file mode 100644
index 000000000..6c1bdc131
--- /dev/null
+++ b/src/js/generated/MaterialSchemaMixin.ts
@@ -0,0 +1,80 @@
+import type { InMemoryEntity } from "@mat3ra/code/dist/js/entity";
+import type { MaterialPropertiesSchema } from "@mat3ra/esse/dist/js/types";
+
+export type MaterialSchemaMixin = MaterialPropertiesSchema;
+
+export function materialSchemaMixin<T extends InMemoryEntity>(
+    item: InMemoryEntity,
+): asserts item is T & MaterialSchemaMixin {
+    // @ts-expect-error
+    const properties: InMemoryEntity<MaterialSchemaMixin> & MaterialSchemaMixin = {
+        get formula() {
+            return this.prop("formula");
+        },
+        set formula(value: MaterialPropertiesSchema["formula"]) {
+            this.setProp("formula", value);
+        },
+        get unitCellFormula() {
+            return this.prop("unitCellFormula");
+        },
+        set unitCellFormula(value: MaterialPropertiesSchema["unitCellFormula"]) {
+            this.setProp("unitCellFormula", value);
+        },
+        get basis() {
+            return this.requiredProp("basis");
+        },
+        set basis(value: MaterialPropertiesSchema["basis"]) {
+            this.setProp("basis", value);
+        },
+        get lattice() {
+            return this.requiredProp("lattice");
+        },
+        set lattice(value: MaterialPropertiesSchema["lattice"]) {
+            this.setProp("lattice", value);
+        },
+        get derivedProperties() {
+            return this.prop("derivedProperties");
+        },
+        set derivedProperties(value: MaterialPropertiesSchema["derivedProperties"]) {
+            this.setProp("derivedProperties", value);
+        },
+        get external() {
+            return this.prop("external");
+        },
+        set external(value: MaterialPropertiesSchema["external"]) {
+            this.setProp("external", value);
+        },
+        get src() {
+            return this.prop("src");
+        },
+        set src(value: MaterialPropertiesSchema["src"]) {
+            this.setProp("src", value);
+        },
+        get scaledHash() {
+            return this.prop("scaledHash");
+        },
+        set scaledHash(value: MaterialPropertiesSchema["scaledHash"]) {
+            this.setProp("scaledHash", value);
+        },
+        get icsdId() {
+            return this.prop("icsdId");
+        },
+        set icsdId(value: MaterialPropertiesSchema["icsdId"]) {
+            this.setProp("icsdId", value);
+        },
+        get isNonPeriodic() {
+            return this.prop("isNonPeriodic");
+        },
+        set isNonPeriodic(value: MaterialPropertiesSchema["isNonPeriodic"]) {
+            this.setProp("isNonPeriodic", value);
+        },
+        get consistencyChecks() {
+            return this.prop("consistencyChecks");
+        },
+        set consistencyChecks(value: MaterialPropertiesSchema["consistencyChecks"]) {
+            this.setProp("consistencyChecks", value);
+        },
+    };
+
+    Object.defineProperties(item, Object.getOwnPropertyDescriptors(properties));
+}
diff --git a/src/js/lattice/lattice.ts b/src/js/lattice/lattice.ts
index cd0e859ae..60737704c 100644
--- a/src/js/lattice/lattice.ts
+++ b/src/js/lattice/lattice.ts
@@ -1,5 +1,6 @@
 import { InMemoryEntity } from "@mat3ra/code/dist/js/entity";
 import {
+    BaseInMemoryEntitySchema,
     Coordinate3DSchema,
     LatticeSchema,
     LatticeTypeEnum,
@@ -30,7 +31,9 @@ export class LatticeVectors extends Cell implements LatticeVectorsSchema {}
 
 export type { LatticeVectorsSchema };
 
-export class Lattice extends InMemoryEntity implements LatticeSchema {
+type LatticeEntitySchema = LatticeSchema & BaseInMemoryEntitySchema;
+
+export class Lattice extends InMemoryEntity<LatticeEntitySchema> implements LatticeSchema {
     static defaultConfig: LatticeSchema = {
         a: 1,
         b: 1,
@@ -296,11 +299,10 @@ export class Lattice extends InMemoryEntity implements LatticeSchema {
         return object;
     }
 
-    // @ts-ignore
-    toJSON(exclude?: string[]): LatticeSchema {
+    toJSON(exclude: (keyof LatticeSchema)[] = []): LatticeSchema {
         return {
             ...super.toJSON(exclude),
             vectors: this.vectors.toJSON(),
-        } as LatticeSchema;
+        };
     }
 }
diff --git a/src/js/lattice/reciprocal/lattice_reciprocal.ts b/src/js/lattice/reciprocal/lattice_reciprocal.ts
index e12f64814..298145204 100644
--- a/src/js/lattice/reciprocal/lattice_reciprocal.ts
+++ b/src/js/lattice/reciprocal/lattice_reciprocal.ts
@@ -7,7 +7,6 @@ import { Lattice } from "../lattice";
 import { paths } from "./paths";
 import { symmetryPoints } from "./symmetry_points";
 
-
 export type KPointCoordinates = number[];
 export type KPointPath = Array<{
     point: string;
@@ -47,9 +46,18 @@ export class ReciprocalLattice extends Lattice {
                 Utils.math.cross(vectors_[1], vectors_[2]),
             ) as unknown as number) / a;
         return [
-            Utils.math.multiply(Utils.math.cross(vectors_[1], vectors_[2]), 1 / divider) as Vector3DSchema,
-            Utils.math.multiply(Utils.math.cross(vectors_[2], vectors_[0]), 1 / divider) as Vector3DSchema,
-            Utils.math.multiply(Utils.math.cross(vectors_[0], vectors_[1]), 1 / divider) as Vector3DSchema,
+            Utils.math.multiply(
+                Utils.math.cross(vectors_[1], vectors_[2]),
+                1 / divider,
+            ) as Vector3DSchema,
+            Utils.math.multiply(
+                Utils.math.cross(vectors_[2], vectors_[0]),
+                1 / divider,
+            ) as Vector3DSchema,
+            Utils.math.multiply(
+                Utils.math.cross(vectors_[0], vectors_[1]),
+                1 / divider,
+            ) as Vector3DSchema,
         ];
     }
 
@@ -57,7 +65,9 @@ export class ReciprocalLattice extends Lattice {
      * Norms of reciprocal vectors.
      */
     get reciprocalVectorNorms(): Vector3DSchema {
-        return this.reciprocalVectors.map((vec) => Utils.math.norm(vec) as number) as Vector3DSchema;
+        return this.reciprocalVectors.map(
+            (vec) => Utils.math.norm(vec) as number,
+        ) as Vector3DSchema;
     }
 
     /**
@@ -167,7 +177,10 @@ export class ReciprocalLattice extends Lattice {
     getDimensionsFromSpacing(spacing: number, units: string = ATOMIC_COORD_UNITS.cartesian) {
         const factor: number = this.conversionTable[units][ATOMIC_COORD_UNITS.cartesian] || 1;
         return this.reciprocalVectorNorms.map((norm: number) => {
-            return Utils.math.max(1, Utils.math.ceil(lodash.round(norm / (spacing * factor), 4))) as number;
+            return Utils.math.max(
+                1,
+                Utils.math.ceil(lodash.round(norm / (spacing * factor), 4)),
+            ) as number;
         }) as Vector3DSchema;
     }
 
diff --git a/src/js/made.ts b/src/js/made.ts
index e16a79e49..998af2d2b 100644
--- a/src/js/made.ts
+++ b/src/js/made.ts
@@ -12,6 +12,7 @@ import { DEFAULT_LATTICE_UNITS, LATTICE_TYPE_CONFIGS } from "./lattice/lattice_t
 import { ReciprocalLattice } from "./lattice/reciprocal/lattice_reciprocal";
 import { UnitCell } from "./lattice/unit_cell";
 import { defaultMaterialConfig, Material } from "./material";
+import { MaterialHashed } from "./material_hashed";
 import parsers from "./parsers/parsers";
 import tools from "./tools/index";
 
@@ -22,6 +23,7 @@ export const Made = {
     ATOMIC_COORD_UNITS,
 
     Material,
+    MaterialHashed,
     defaultMaterialConfig,
     Lattice,
     Cell,
@@ -45,6 +47,7 @@ export {
     units,
     ATOMIC_COORD_UNITS,
     Material,
+    MaterialHashed,
     defaultMaterialConfig,
     Lattice,
     Cell,
diff --git a/src/js/material.ts b/src/js/material.ts
index 6abac3d22..520207f26 100644
--- a/src/js/material.ts
+++ b/src/js/material.ts
@@ -1,16 +1,19 @@
-import { type DefaultableInMemoryEntity, InMemoryEntity } from "@mat3ra/code/dist/js/entity";
-import { defaultableEntityMixin } from "@mat3ra/code/dist/js/entity/mixins/DefaultableMixin";
+import { InMemoryEntity } from "@mat3ra/code/dist/js/entity";
 import {
-    type HasConsistencyChecks,
-    hasConsistencyChecksMixin,
-} from "@mat3ra/code/dist/js/entity/mixins/HasConsistencyChecksMixin";
+    type Defaultable,
+    defaultableEntityMixin,
+} from "@mat3ra/code/dist/js/entity/mixins/DefaultableMixin";
 import {
     type HasMetadata,
     hasMetadataMixin,
 } from "@mat3ra/code/dist/js/entity/mixins/HasMetadataMixin";
-import type { AnyObject } from "@mat3ra/esse/dist/js/esse/types";
+import {
+    type NamedEntity,
+    namedEntityMixin,
+} from "@mat3ra/code/dist/js/entity/mixins/NamedEntityMixin";
 import type {
     AtomicConstraintsSchema,
+    BasisSchema,
     ConsistencyCheck,
     DerivedPropertiesSchema,
     FileSourceSchema,
@@ -28,26 +31,32 @@ import {
     PRIMITIVE_TO_CONVENTIONAL_CELL_MULTIPLIERS,
 } from "./cell/conventional_cell";
 import { Constraint } from "./constraints/constraints";
+import { type MaterialSchemaMixin, materialSchemaMixin } from "./generated/MaterialSchemaMixin";
 import { Lattice } from "./lattice/lattice";
 import parsers from "./parsers/parsers";
 import supercellTools from "./tools/supercell";
 
-interface Material
-    extends HasConsistencyChecks,
-        DefaultableInMemoryEntity,
-        Required<HasMetadata<MaterialSchema["metadata"]>> {}
+function parseBasis(
+    textOrObject: string | BasisConfig,
+    format?: "xyz",
+    unitz?: BasisSchema["units"],
+): ConstrainedBasisConfig {
+    if (typeof textOrObject === "string") {
+        if (format !== "xyz") {
+            throw new Error("Invalid format");
+        }
+        return parsers.xyz.toBasisConfig(textOrObject, unitz);
+    }
+    return { constraints: [], ...textOrObject };
+}
 
-// TODO: remove in-line type creation
-type MaterialSchemaWithConsistencyChecksAsString = Omit<MaterialSchema, "consistencyChecks"> & {
-    consistencyChecks?: ConsistencyCheck[];
-};
+export type PartialBy<T, K extends keyof T> = Omit<T, K> & Partial<Pick<T, K>>;
 
-type OptionallyConstrainedBasisConfig = BasisConfig &
-    Partial<Pick<ConstrainedBasisConfig, "constraints">>;
+type Schema = MaterialSchema;
 
-type Schema = MaterialSchemaWithConsistencyChecksAsString;
+export type MaterialConfig<S extends Schema = Schema> = PartialBy<S, "name" | "metadata">;
 
-export const defaultMaterialConfig: MaterialSchema = {
+export const defaultMaterialConfig: Schema = {
     name: "Silicon FCC",
     basis: {
         elements: [
@@ -89,10 +98,23 @@ export const defaultMaterialConfig: MaterialSchema = {
     metadata: {},
 };
 
-class Material extends InMemoryEntity implements Schema {
+interface BaseMaterial
+    extends MaterialSchemaMixin,
+        NamedEntity,
+        Defaultable,
+        Required<HasMetadata<Schema["metadata"]>> {}
+
+class BaseMaterial<S extends Schema = Schema> extends InMemoryEntity<S> {}
+
+materialSchemaMixin(BaseMaterial.prototype);
+namedEntityMixin(BaseMaterial.prototype);
+defaultableEntityMixin(BaseMaterial);
+hasMetadataMixin(BaseMaterial.prototype);
+
+class Material<S extends Schema = Schema> extends BaseMaterial<S> implements Schema {
     declare static createDefault: () => Material;
 
-    static get defaultConfig() {
+    static get defaultConfig(): MaterialConfig {
         return defaultMaterialConfig;
     }
 
@@ -109,40 +131,27 @@ class Material extends InMemoryEntity implements Schema {
         };
     }
 
-    get name() {
-        return this.prop("name") ?? this.formula; // if name is not set, use formula, but keep empty string
-    }
-
-    set name(name: string) {
-        this.setProp("name", name);
-    }
+    constraints: AtomicConstraintsSchema = [];
 
-    get src() {
-        return this.prop("src");
-    }
+    // NoInfer: keep default S (or an explicit type arg) instead of inferring S from the config literal.
+    // Atomic constraints are accepted only via the second argument (not on config.basis).
+    constructor(config: NoInfer<MaterialConfig<S>>, constraints: AtomicConstraintsSchema = []) {
+        super({
+            ...config,
+            formula: config.formula ?? "",
+            name: config.name ?? config.formula ?? "",
+            metadata: config.metadata ?? {},
+        } as S);
 
-    set src(src: FileSourceSchema | undefined) {
-        this.setProp("src", src);
+        this.formula = config.formula || this.getBasis().formula;
+        this.name = this.name || this.formula;
+        this.constraints = constraints;
     }
 
     updateFormula() {
-        this.setProp("formula", this.Basis.formula);
-        this.setProp("unitCellFormula", this.Basis.unitCellFormula);
-    }
-
-    /**
-     * Gets Bolean value for whether or not a material is non-periodic vs periodic.
-     * False = periodic, True = non-periodic
-     */
-    get isNonPeriodic(): boolean {
-        return this.prop("isNonPeriodic", false);
-    }
-
-    /**
-     * @summary Sets the value of isNonPeriodic based on Boolean value passed as an argument.
-     */
-    set isNonPeriodic(bool: boolean) {
-        this.setProp("isNonPeriodic", bool);
+        const basis = this.getBasis();
+        this.formula = basis.formula;
+        this.unitCellFormula = basis.unitCellFormula;
     }
 
     /**
@@ -156,18 +165,7 @@ class Material extends InMemoryEntity implements Schema {
      * @summary Returns the derived properties array for a material.
      */
     getDerivedProperties(): DerivedPropertiesSchema {
-        return this.prop("derivedProperties", []);
-    }
-
-    /**
-     * Gets material's formula
-     */
-    get formula(): string {
-        return this.prop("formula") || this.Basis.formula;
-    }
-
-    get unitCellFormula(): string {
-        return this.prop("unitCellFormula") || this.Basis.unitCellFormula;
+        return this.derivedProperties ?? [];
     }
 
     unsetFileProps() {
@@ -176,29 +174,22 @@ class Material extends InMemoryEntity implements Schema {
         this.unsetProp("external");
     }
 
-    /**
-     * @param textOrObject Basis text or JSON object.
-     * @param format Format (xyz, etc.)
-     * @param unitz crystal/cartesian
-     */
-    setBasis(textOrObject: string | BasisConfig, format?: string, unitz?: string) {
-        let basis: BasisConfig | undefined;
-        if (typeof textOrObject === "string" && format === "xyz") {
-            basis = parsers.xyz.toBasisConfig(textOrObject, unitz);
-        } else {
-            basis = textOrObject as BasisConfig;
-        }
-        this.setProp("basis", basis);
+    setBasis(basis: BasisConfig): void;
+
+    setBasis(basis: string, format: "xyz", unitz?: BasisSchema["units"]): void;
+
+    setBasis(textOrObject: string | BasisConfig, format?: "xyz", unitz?: BasisSchema["units"]) {
+        const { constraints, ...basis } = parseBasis(textOrObject, format, unitz);
+
+        this.basis = basis;
+        this.constraints = constraints ?? [];
         this.unsetFileProps();
         this.updateFormula();
     }
 
     setBasisConstraints(constraints: Constraint[]) {
-        const basisWithConstraints = {
-            ...this.basis,
-            constraints: constraints.map((c) => c.toJSON()),
-        };
-        this.setBasis(basisWithConstraints);
+        this.constraints = constraints.map((c) => ({ id: c.id, value: c.value }));
+        this.unsetFileProps();
     }
 
     setBasisConstraintsFromArrayOfObjects(constraints: AtomicConstraintsSchema) {
@@ -208,53 +199,46 @@ class Material extends InMemoryEntity implements Schema {
         this.setBasisConstraints(constraintsInstances);
     }
 
-    get basis() {
-        return this.requiredProp<OptionallyConstrainedBasisConfig>("basis");
-    }
-
-    // returns the instance of {ConstrainedBasis} class
-    get Basis() {
+    getBasis(constraints?: AtomicConstraintsSchema) {
         const basisData = this.basis;
 
         return new ConstrainedBasis({
             ...basisData,
-            cell: this.Lattice.vectors,
-            constraints: basisData.constraints || [],
+            cell: this.getLattice().vectors,
+            constraints: constraints ?? this.constraints,
         });
     }
 
-    /**
-     * High-level access to unique elements from material instead of basis.
-     */
-    get uniqueElements() {
-        return this.Basis.uniqueElements;
-    }
-
-    get lattice(): LatticeSchema {
-        return this.prop("lattice") as LatticeSchema;
-    }
+    setLattice(lattice: LatticeSchema) {
+        const basis = this.getBasis();
+        const originalIsInCrystalUnits = basis.isInCrystalUnits;
 
-    set lattice(config: LatticeSchema) {
-        const originalIsInCrystalUnits = this.Basis.isInCrystalUnits;
-        const basis = this.Basis;
         basis.toCartesian();
+        basis.cell = new Lattice(lattice).vectors;
 
-        const newLattice = new Lattice(config);
-        basis.cell = newLattice.vectors;
-        if (originalIsInCrystalUnits) basis.toCrystal();
+        if (originalIsInCrystalUnits) {
+            basis.toCrystal();
+        }
 
-        // Preserve all properties from the original basis to ensure constraints are included
-        const newBasisConfig = basis.toJSON();
-        this.setProp("basis", newBasisConfig);
-        this.setProp("lattice", config);
+        const { constraints: nextConstraints, ...basisWithoutConstraints } = basis.toJSON();
+        this.basis = basisWithoutConstraints;
+        this.constraints = nextConstraints ?? this.constraints;
+        this.lattice = lattice;
 
         this.unsetFileProps();
     }
 
-    get Lattice(): Lattice {
+    getLattice() {
         return new Lattice(this.lattice);
     }
 
+    /**
+     * High-level access to unique elements from material instead of basis.
+     */
+    get uniqueElements() {
+        return this.getBasis().uniqueElements;
+    }
+
     /**
      * Returns the inchi string from the derivedProperties for a non-periodic material, or throws an error if the
      *  inchi cannot be found.
@@ -282,60 +266,38 @@ class Material extends InMemoryEntity implements Schema {
         let message;
         if (!this.isNonPeriodic || bypassNonPeriodicCheck) {
             message =
-                this.Basis.hashString + "#" + this.Lattice.getHashString(isScaled) + "#" + salt;
+                this.getBasis().hashString +
+                "#" +
+                this.getLattice().getHashString(isScaled) +
+                "#" +
+                salt;
         } else {
             message = this.getInchiStringForHash();
         }
         return CryptoJS.MD5(message).toString();
     }
 
-    set hash(hash: string) {
-        this.setProp("hash", hash);
-    }
-
-    get hash(): string {
-        return this.prop("hash") as string;
-    }
-
-    /**
-     * Calculates hash from basis and lattice as above + scales lattice properties to make lattice.a = 1
-     */
-    get scaledHash(): string {
-        return this.calculateHash("", true);
-    }
-
-    get external() {
-        return this.prop<MaterialSchema["external"]>("external");
-    }
-
-    set external(external: MaterialSchema["external"]) {
-        this.setProp("external", external);
-    }
-
     /**
      * Converts basis to crystal/fractional coordinates.
      */
-    toCrystal() {
-        const basis = this.Basis;
-        basis.toCrystal();
-        this.setProp("basis", basis.toJSON());
+    toCrystal(constraints?: AtomicConstraintsSchema) {
+        this.setBasis(this.getBasis(constraints).toCrystal().toJSON());
     }
 
     /**
      * Converts current material's basis coordinates to cartesian.
      * No changes if coordinates already cartesian.
      */
-    toCartesian() {
-        const basis = this.Basis;
-        basis.toCartesian();
-        this.setProp("basis", basis.toJSON());
+    toCartesian(constraints?: AtomicConstraintsSchema) {
+        this.setBasis(this.getBasis(constraints).toCartesian().toJSON());
     }
 
     /**
      * Returns material's basis in XYZ format.
+     * Uses ESSE material JSON plus constraints separately (same contract as POSCAR/QE serializers).
      */
     getBasisAsXyz(fractional = false): string {
-        return parsers.xyz.fromMaterial(this.toJSON(), fractional);
+        return parsers.xyz.fromMaterial(this.toJSON(), fractional, this.constraints);
     }
 
     /**
@@ -352,7 +314,7 @@ class Material extends InMemoryEntity implements Schema {
      * ```
      */
     getAsQEFormat(): string {
-        return parsers.espresso.toEspressoFormat(this.toJSON());
+        return parsers.espresso.toEspressoFormat(this.toJSON(), this.constraints);
     }
 
     /**
@@ -363,7 +325,25 @@ class Material extends InMemoryEntity implements Schema {
         if (this.src?.extension === "poscar" && !ignoreOriginal) {
             return this.src.text;
         }
-        return parsers.poscar.toPoscar(this.toJSON(), omitConstraints);
+        return parsers.poscar.toPoscar(this.toJSON(), this.constraints, omitConstraints);
+    }
+
+    /**
+     * Preserve private constraints via the second constructor argument (never on basis JSON).
+     */
+    clone(extraContext?: object): this {
+        type ThisType = typeof this;
+        type ThisConstructor = {
+            new (o: object, constraints?: AtomicConstraintsSchema): ThisType;
+        };
+
+        return new (this.constructor as ThisConstructor)(
+            {
+                ...this.toJSON(),
+                ...extraContext,
+            },
+            this.constraints,
+        );
     }
 
     /**
@@ -372,22 +352,27 @@ class Material extends InMemoryEntity implements Schema {
     getACopyWithConventionalCell(): this {
         const material = this.clone();
 
+        const lattice = this.getLattice();
+
         // if conventional and primitive cells are the same => return a copy.
-        if (isConventionalCellSameAsPrimitiveForLatticeType(this.Lattice.type)) {
+        if (isConventionalCellSameAsPrimitiveForLatticeType(lattice.type)) {
             return material;
         }
 
         const conventionalSupercellMatrix =
-            PRIMITIVE_TO_CONVENTIONAL_CELL_MULTIPLIERS[this.Lattice.type];
-        const conventionalLatticeType =
-            PRIMITIVE_TO_CONVENTIONAL_CELL_LATTICE_TYPES[this.Lattice.type];
+            PRIMITIVE_TO_CONVENTIONAL_CELL_MULTIPLIERS[lattice.type];
+        const conventionalLatticeType = PRIMITIVE_TO_CONVENTIONAL_CELL_LATTICE_TYPES[lattice.type];
         const config = supercellTools.generateConfig(this, conventionalSupercellMatrix);
 
         config.lattice.type = conventionalLatticeType;
         config.name = `${this.name} - conventional cell`;
 
-        // @ts-expect-error
-        return new this.constructor(config) as this;
+        type ThisType = typeof this;
+        type ThisConstructor = {
+            new (o: object, constraints?: AtomicConstraintsSchema): ThisType;
+        };
+
+        return new (this.constructor as ThisConstructor)(config, this.constraints);
     }
 
     /**
@@ -409,9 +394,9 @@ class Material extends InMemoryEntity implements Schema {
     getBasisConsistencyChecks(): ConsistencyCheck[] {
         const checks: ConsistencyCheck[] = [];
         const limit = 1000;
-        const basis = this.Basis;
+        const basis = this.getBasis();
 
-        if (this.Basis.elements.length < limit) {
+        if (basis.elements.length < limit) {
             const overlappingAtomsGroups = basis.getOverlappingAtoms();
             overlappingAtomsGroups.forEach(({ id1, id2, element1, element2 }) => {
                 checks.push(
@@ -438,21 +423,16 @@ class Material extends InMemoryEntity implements Schema {
         return checks;
     }
 
-    toJSON(): MaterialSchema & AnyObject {
-        // validation intoJSON() method will fail if name is not set in _json
-        this.name = this.name || this.formula;
+    toJSON(): S {
+        const { constraints, ...basis } = this.getBasis().toJSON();
 
         return {
-            ...(super.toJSON() as MaterialSchema & AnyObject),
-            lattice: this.Lattice.toJSON(),
-            basis: this.Basis.toJSON(),
+            ...super.toJSON(),
+            lattice: this.getLattice().toJSON(),
+            basis,
             isNonPeriodic: this.isNonPeriodic,
-        };
+        } as S;
     }
 }
 
-defaultableEntityMixin(Material);
-hasConsistencyChecksMixin(Material.prototype);
-hasMetadataMixin(Material.prototype);
-
 export { Material };
diff --git a/src/js/material_hashed.ts b/src/js/material_hashed.ts
new file mode 100644
index 000000000..30a7e3e44
--- /dev/null
+++ b/src/js/material_hashed.ts
@@ -0,0 +1,71 @@
+import {
+    type HashedSchemaMixin,
+    hashedSchemaMixin,
+} from "@mat3ra/code/dist/js/generated/HashedSchemaMixin";
+import type {
+    AtomicConstraintsSchema,
+    MaterialHashedSchema,
+    MaterialSchema,
+} from "@mat3ra/esse/dist/js/types";
+
+import { type MaterialConfig, type PartialBy, defaultMaterialConfig, Material } from "./material";
+
+type Schema = MaterialHashedSchema;
+
+export type MaterialHashedConfig<S extends Schema = Schema> = PartialBy<
+    S,
+    "name" | "metadata" | "hash"
+>;
+
+// eslint-disable-next-line @typescript-eslint/no-empty-interface
+interface MaterialHashed extends HashedSchemaMixin {}
+
+class MaterialHashed<S extends Schema = Schema> extends Material<S> implements Schema {
+    declare static createDefault: () => MaterialHashed;
+
+    static get defaultConfig(): MaterialHashedConfig {
+        return defaultMaterialConfig;
+    }
+
+    // NoInfer: keep default S (or an explicit type arg) instead of inferring S from the config literal.
+    constructor(
+        config: NoInfer<MaterialHashedConfig<S>>,
+        constraints: AtomicConstraintsSchema = [],
+    ) {
+        // MaterialConfig<S> still requires hash; use a placeholder until calculateHash can run.
+        super(
+            {
+                ...config,
+                hash: config.hash ?? "",
+            } as MaterialConfig<S>,
+            constraints,
+        );
+        this.hash = config.hash ?? this.calculateHash("", false, this.isNonPeriodic);
+    }
+
+    get basis(): MaterialSchema["basis"] {
+        return super.basis;
+    }
+
+    set basis(value: MaterialSchema["basis"]) {
+        super.basis = value;
+        this.updateHash();
+    }
+
+    get lattice(): MaterialSchema["lattice"] {
+        return super.lattice;
+    }
+
+    set lattice(value: MaterialSchema["lattice"]) {
+        super.lattice = value;
+        this.updateHash();
+    }
+
+    updateHash() {
+        this.hash = this.calculateHash("", false, this.isNonPeriodic);
+    }
+}
+
+hashedSchemaMixin(MaterialHashed.prototype);
+
+export { MaterialHashed };
diff --git a/src/js/parsers/espresso.ts b/src/js/parsers/espresso.ts
index 7252ac9c1..708bb1ace 100644
--- a/src/js/parsers/espresso.ts
+++ b/src/js/parsers/espresso.ts
@@ -1,4 +1,4 @@
-import { MaterialSchema } from "@mat3ra/esse/dist/js/types";
+import { AtomicConstraintsSchema, MaterialSchema } from "@mat3ra/esse/dist/js/types";
 import { map } from "lodash";
 import s from "underscore.string";
 
@@ -7,9 +7,12 @@ import xyz from "./xyz";
 
 /**
  * Construct textual representation of a materialOrConfig according to Quantum ESPRESSO pw.x input format.
- * @param materialOrConfig - material class instance or its config object
+ * Constraints are not part of ESSE basis — pass them separately.
  */
-function toEspressoFormat(materialOrConfig: MaterialSchema): string {
+function toEspressoFormat(
+    materialOrConfig: MaterialSchema,
+    constraints: AtomicConstraintsSchema = [],
+): string {
     const l = new Lattice(materialOrConfig.lattice);
     const vectors = l.vectorArrays;
     const vectorsAsString = map(vectors, (v) => {
@@ -21,7 +24,7 @@ function toEspressoFormat(materialOrConfig: MaterialSchema): string {
     return s.sprintf(
         "CELL_PARAMETERS (angstroms)\n%s\n\nATOMIC_POSITIONS (crystal)\n%s",
         vectorsAsString,
-        xyz.fromMaterial(materialOrConfig),
+        xyz.fromMaterial(materialOrConfig, false, constraints),
     );
 }
 
diff --git a/src/js/parsers/native_format_parsers.ts b/src/js/parsers/native_format_parsers.ts
index 3b0bb4e9f..d498575ea 100644
--- a/src/js/parsers/native_format_parsers.ts
+++ b/src/js/parsers/native_format_parsers.ts
@@ -1,4 +1,4 @@
-import Poscar from "./poscar";
+import Poscar, { type MaterialSchemaWithConstraints } from "./poscar";
 
 const NATIVE_FORMAT = {
     JSON: "json",
@@ -7,13 +7,13 @@ const NATIVE_FORMAT = {
     PWX: "pwx",
     XYZ: "xyz",
     UNKNOWN: "unknown",
-};
+} as const;
 
 /**
  * @summary Detects the format of the input string
- * @throws {Error} - If the input string is unknown format
- * @param {string} text -  input string to detect format
- * @returns {NATIVE_FORMAT} - Format of the input string
+ * @throws If the input string is unknown format
+ * @param text input string to detect format
+ * @returns Format of the input string
  */
 function detectFormat(text: string) {
     const jsonRegex = /^\s*\{/;
@@ -25,11 +25,11 @@ function detectFormat(text: string) {
 
 /**
  * @summary Function to handle conversion from native formats
- * @param {String} text - input string to detect format and convert
- * @throws {Error} - If the input string is of unknown format
- * @return {Object} - Material config
+ * @param text - input string to detect format and convert
+ * @throws If the input string is of unknown format
+ * @return Material config
  */
-function convertFromNativeFormat(text: string) {
+function convertFromNativeFormat(text: string): MaterialSchemaWithConstraints {
     const format = detectFormat(text);
 
     switch (format) {
diff --git a/src/js/parsers/poscar.ts b/src/js/parsers/poscar.ts
index 479b857f3..94e43226e 100644
--- a/src/js/parsers/poscar.ts
+++ b/src/js/parsers/poscar.ts
@@ -1,4 +1,5 @@
 import {
+    AtomicConstraintsSchema,
     BasisSchema,
     Coordinate3DSchema,
     MaterialSchema,
@@ -15,7 +16,6 @@ import { ATOMIC_COORD_UNITS } from "../constants";
 import { AtomicConstraintValue } from "../constraints/constraints";
 import { Lattice } from "../lattice/lattice";
 
-
 const _print = (x: number, printFormat = "%14.9f") => s.sprintf(printFormat, Utils.math.precise(x));
 const _latticeVectorsToString = (vectors: Vector3DSchema[]) =>
     vectors.map((v) => v.map((c) => _print(c)).join("\t")).join("\n");
@@ -23,16 +23,21 @@ const atomicConstraintsCharFromBool = (bool: boolean): string => (bool ? "T" : "
 
 /**
  * Obtain a textual representation of a material in POSCAR format.
- * @param materialOrConfig - material class instance or config object.
- * @param omitConstraints - whether to discard constraints passed with material.
+ * @param materialOrConfig - material class instance or config object (ESSE basis; no constraints).
+ * @param constraints - atomic constraints, separate from material config.
+ * @param omitConstraints - whether to discard constraints when serializing.
  */
-function toPoscar(materialOrConfig: MaterialSchema, omitConstraints = false): string {
+function toPoscar(
+    materialOrConfig: MaterialSchema,
+    constraints: AtomicConstraintsSchema = [],
+    omitConstraints = false,
+): string {
     const lattice = new Lattice(materialOrConfig.lattice);
     const vectorsAsString = _latticeVectorsToString(lattice.vectorArrays);
-    // @ts-ignore
     const basis = new ConstrainedBasis({
         ...materialOrConfig.basis,
         cell: Cell.fromVectorsArray(lattice.vectorArrays),
+        constraints: omitConstraints ? [] : constraints,
     });
     const BasisLines: string[] = [];
     let addSelectiveDynamics = false;
@@ -73,12 +78,17 @@ export function atomsCount(poscarFileContent: string): number {
     return atomsLine.map((x) => parseInt(x, 10)).reduce((a, b) => a + b);
 }
 
+export type MaterialSchemaWithConstraints = Omit<MaterialSchema, "metadata"> & {
+    metadata?: MaterialSchema["metadata"];
+    constraints?: AtomicConstraintsSchema;
+};
+
 /**
  * Parses POSCAR file into a Material config object.
  * @param fileContent - POSCAR file content.
  * @return Material config.
  */
-function fromPoscar(fileContent: string): object {
+function fromPoscar(fileContent: string): MaterialSchemaWithConstraints {
     const cleanContent = Utils.str.removeCommentsFromSourceCode(fileContent, "fortran");
     const lines = cleanContent.split("\n");
 
@@ -151,11 +161,15 @@ function fromPoscar(fileContent: string): object {
         constraints,
     });
 
+    const basisJson = basis.toJSON();
+    const { constraints: atomicConstraints, ...basisWithoutConstraints } = basisJson;
+
     const materialConfig = {
         lattice: lattice.toJSON(),
-        basis: basis.toJSON(),
+        basis: basisWithoutConstraints,
         name: comment,
         isNonPeriodic: false,
+        ...(atomicConstraints?.length ? { constraints: atomicConstraints } : {}),
     };
 
     return materialConfig;
diff --git a/src/js/parsers/xyz.ts b/src/js/parsers/xyz.ts
index 430841fc8..b653db149 100644
--- a/src/js/parsers/xyz.ts
+++ b/src/js/parsers/xyz.ts
@@ -1,4 +1,4 @@
-import { MaterialSchema } from "@mat3ra/esse/dist/js/types";
+import { AtomicConstraintsSchema, MaterialSchema } from "@mat3ra/esse/dist/js/types";
 import { isEmpty, isNaN, map } from "lodash";
 import s from "underscore.string";
 
@@ -161,16 +161,19 @@ function fromBasis(basisClsInstance: ConstrainedBasis, coordinatePrintFormat: st
 
 /**
  * Create XYZ from Material class instance (or its JSON config).
- * @param materialOrConfig Material.
- * @param fractional Coordinate units as fractional.
- * @return Class Instance
+ * Constraints are not part of ESSE basis — pass them separately.
+ * Prefer fromBasis when you already have a ConstrainedBasis instance.
  */
-function fromMaterial(materialOrConfig: MaterialSchema, fractional = false): string {
+function fromMaterial(
+    materialOrConfig: MaterialSchema,
+    fractional = false,
+    constraints: AtomicConstraintsSchema = [],
+): string {
     const lattice = new Lattice(materialOrConfig.lattice);
-    // @ts-ignore
     const basis = new ConstrainedBasis({
         ...materialOrConfig.basis,
         cell: Cell.fromVectorsArray(lattice.vectorArrays),
+        constraints,
     });
     if (fractional) {
         basis.toCrystal();
diff --git a/src/js/parsers/xyz_combinatorial_basis.ts b/src/js/parsers/xyz_combinatorial_basis.ts
index 18bf27c71..bbac98664 100644
--- a/src/js/parsers/xyz_combinatorial_basis.ts
+++ b/src/js/parsers/xyz_combinatorial_basis.ts
@@ -8,7 +8,6 @@ import { AtomicCoordinateValue } from "../basis/coordinates";
 import { AtomicElementValue } from "../basis/elements";
 import { Cell } from "../cell/cell";
 
-
 /**
  * @summary Combinatorial XYZ basis class and related. Create and get all information about basis and elements in it.
  * Constructor accepts string in extended XYZ format. Extended XYZ format is as follows:
@@ -225,7 +224,11 @@ export class CombinatorialBasis {
             dimensions.push(itemsSet);
         });
         // @ts-ignore // We're multiplying objects with math, not numbers. No type casting will help.
-        const basisSet = Utils.math.cartesianProduct.apply(null, dimensions) as ElementWithCoordinate[][];
+        const basisSet = Utils.math.cartesianProduct.apply(
+            null,
+            // @ts-ignore
+            dimensions,
+        ) as ElementWithCoordinate[][];
         return basisSet.map((basis: ElementWithCoordinate[]) =>
             basis.filter((entry) => entry.element !== VACANCY_CHARACTER),
         );
diff --git a/src/js/tools/basis.ts b/src/js/tools/basis.ts
index 9b8ce2ad3..ea1307629 100644
--- a/src/js/tools/basis.ts
+++ b/src/js/tools/basis.ts
@@ -5,7 +5,6 @@ import { chunk, flatten } from "lodash";
 import { Basis } from "../basis/basis";
 import { AtomicCoordinateValue, Coordinate } from "../basis/coordinates";
 
-
 const ADD = Utils.math.add;
 const MULT = Utils.math.multiply;
 
diff --git a/src/js/tools/cell.ts b/src/js/tools/cell.ts
index d21d7ba23..7a9225b9f 100644
--- a/src/js/tools/cell.ts
+++ b/src/js/tools/cell.ts
@@ -3,7 +3,6 @@ import { Utils } from "@mat3ra/utils";
 
 import { Cell } from "../cell/cell";
 
-
 /**
  * Returns the list of points on the original lattice contained in the supercell in fractional coordinates.
  * Source: https://pymatgen.org/_modules/pymatgen/util/coord.html
diff --git a/src/js/tools/material.ts b/src/js/tools/material.ts
index 70d957c7f..2d81cd2f3 100644
--- a/src/js/tools/material.ts
+++ b/src/js/tools/material.ts
@@ -5,7 +5,6 @@ import { ATOMIC_COORD_UNITS } from "../constants";
 import { Lattice } from "../lattice/lattice";
 import { Material } from "../material";
 
-
 /**
  * Scales one lattice vector for the given material
  * @param material {Material} The material acted upon.
@@ -18,9 +17,9 @@ function scaleOneLatticeVector(material: Material, key: "a" | "b" | "c" = "a", f
     if (lattice.vectors === undefined) {
         throw new Error("Lattice vectors are undefined");
     }
-    lattice.vectors[key] = lattice.vectors![key].map((v) => v * factor) as Vector3DSchema;
+    lattice.vectors[key] = lattice.vectors[key].map((v) => v * factor) as Vector3DSchema;
 
-    material.lattice = Lattice.fromVectors(lattice.vectors).toJSON();
+    material.setLattice(Lattice.fromVectors(lattice.vectors).toJSON());
 }
 
 /**
@@ -29,10 +28,12 @@ function scaleOneLatticeVector(material: Material, key: "a" | "b" | "c" = "a", f
  * @param material {Material}
  */
 function scaleLatticeToMakeNonPeriodic(material: Material) {
-    material.lattice = Lattice.fromConfigPartial({
-        a: material.Basis.getMinimumLatticeSize(),
-        type: "CUB",
-    } as LatticeSchema).toJSON();
+    material.setLattice(
+        Lattice.fromConfigPartial({
+            a: material.getBasis().getMinimumLatticeSize(),
+            type: "CUB",
+        } as LatticeSchema).toJSON(),
+    );
 }
 
 /**
@@ -41,13 +42,14 @@ function scaleLatticeToMakeNonPeriodic(material: Material) {
  * @param material {Material}
  * */
 function translateAtomsToCenter(material: Material) {
-    const originalUnits = material.Basis.units;
+    const basis = material.getBasis();
+    const originalUnits = basis.units;
     material.toCartesian();
-    const updatedBasis = material.Basis;
+    const updatedBasis = basis.toCartesian();
     const centerOfCoordinates = updatedBasis.centerOfCoordinatesPoint;
     const centerOfLattice = Utils.math.multiply(
         0.5,
-        material.Lattice.vectorArrays.reduce((a, b) => Utils.math.add(a, b) as Vector3DSchema),
+        material.getLattice().vectorArrays.reduce((a, b) => Utils.math.add(a, b) as Vector3DSchema),
     );
     const translationVector = Utils.math.subtract(centerOfLattice, centerOfCoordinates);
     updatedBasis.translateByVector(translationVector as Vector3DSchema);
diff --git a/src/js/tools/supercell.ts b/src/js/tools/supercell.ts
index 4d8dffe30..402644ea5 100644
--- a/src/js/tools/supercell.ts
+++ b/src/js/tools/supercell.ts
@@ -1,4 +1,8 @@
-import { Coordinate3DSchema, Matrix3X3Schema } from "@mat3ra/esse/dist/js/types";
+import {
+    type MaterialSchema,
+    Coordinate3DSchema,
+    Matrix3X3Schema,
+} from "@mat3ra/esse/dist/js/types";
 import { Utils } from "@mat3ra/utils";
 
 import { Basis } from "../basis/basis";
@@ -8,7 +12,6 @@ import { Lattice } from "../lattice/lattice";
 import type { Material } from "../material";
 import cellTools from "./cell";
 
-
 const ADD = Utils.math.add;
 
 /**
@@ -53,18 +56,19 @@ function generateNewBasisWithinSupercell(
 
 /**
  * @summary Generates supercell config for the specified material.
- * @param material
- * @param supercellMatrix {Number[][]}
  */
-function generateConfig(material: Material, supercellMatrix: Matrix3X3Schema) {
+function generateConfig<S extends MaterialSchema = MaterialSchema>(
+    material: Material<S>,
+    supercellMatrix: Matrix3X3Schema,
+) {
     const det = Utils.math.det(supercellMatrix);
     if (det === 0) {
         throw new Error("Scaling matrix is degenerate.");
     }
-    const cell = material.Lattice.vectors;
+    const cell = material.getLattice().vectors;
     const supercell = cell.cloneAndScaleByMatrix(supercellMatrix);
     const newBasis = generateNewBasisWithinSupercell(
-        material.Basis,
+        material.getBasis(),
         cell,
         supercell,
         supercellMatrix,
diff --git a/src/js/tools/surface.ts b/src/js/tools/surface.ts
index 3a279bfb0..d8dd5a805 100644
--- a/src/js/tools/surface.ts
+++ b/src/js/tools/surface.ts
@@ -1,6 +1,6 @@
 import {
+    type MaterialSchema,
     Coordinate3DSchema,
-    MaterialSchema,
     Matrix3X3Schema,
     Vector3DSchema,
 } from "@mat3ra/esse/dist/js/types";
@@ -8,7 +8,7 @@ import { Utils } from "@mat3ra/utils";
 
 import { Cell } from "../cell/cell";
 import { Lattice } from "../lattice/lattice";
-import { Material } from "../material";
+import { type MaterialConfig, Material } from "../material";
 import SupercellTools from "./supercell";
 
 const MULT = Utils.math.multiply;
@@ -158,7 +158,7 @@ function getDimensionsScalingMatrix(
     return transformationMatrix as Matrix3X3Schema;
 }
 
-export type SlabConfigSchema = MaterialSchema & {
+export type SlabConfigSchema = MaterialConfig & {
     outOfPlaneAxisIndex: number;
 };
 
@@ -171,8 +171,8 @@ export type SlabConfigSchema = MaterialSchema & {
  * @param vy {Number} Size of lateral supercell along the direction of the second (y) cell vector (Positive Integer).
  * @return {Object}
  */
-function generateConfig(
-    material: Material,
+function generateConfig<S extends MaterialSchema = MaterialSchema>(
+    material: Material<S>,
     millerIndices: Coordinate3DSchema,
     numberOfLayers = 1,
     vx = 1,
@@ -181,7 +181,7 @@ function generateConfig(
     if (numberOfLayers < 1)
         throw new Error("Made.tools.surface.generateConfig: number of layers < 1.");
 
-    const cell = material.Lattice.vectors;
+    const cell = material.getLattice().vectors;
     const millerScalingMatrix = getMillerScalingMatrix(cell, millerIndices);
     const millerSupercell = cell.cloneAndScaleByMatrix(millerScalingMatrix);
     const millerPlanePseudoNormal = cell.convertPointToCartesian(millerIndices);
@@ -195,7 +195,7 @@ function generateConfig(
     );
     const supercellMatrix = MULT(dimensionsScalingMatrix, millerScalingMatrix);
     const supercell = millerSupercell.cloneAndScaleByMatrix(dimensionsScalingMatrix);
-    const tempBasis = material.Basis.clone();
+    const tempBasis = material.getBasis().clone();
     const newBasis = SupercellTools.generateNewBasisWithinSupercell(
         tempBasis,
         cell,
diff --git a/tests/fixtures/FeO.constraints.json b/tests/fixtures/FeO.constraints.json
new file mode 100644
index 000000000..be14b117d
--- /dev/null
+++ b/tests/fixtures/FeO.constraints.json
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d319520a167c9b81c4b6beaaca22e8c4b44193fc656f511e55f7639d59a8e26a
+size 451
diff --git a/tests/fixtures/FeO.json b/tests/fixtures/FeO.json
index 99515869e..167b40eb7 100644
--- a/tests/fixtures/FeO.json
+++ b/tests/fixtures/FeO.json
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:ceaee5513c8093601a075bbb93bd8914e3dff76e24c2da0d67b35b785a27b8a2
-size 1254
+oid sha256:bfaf9788fd26553e8372fe045221de23530fb13576ae9c31af27caeaa88b1a2c
+size 1315
diff --git a/tests/fixtures/Graphene.constraints.json b/tests/fixtures/Graphene.constraints.json
new file mode 100644
index 000000000..edcbd9b22
--- /dev/null
+++ b/tests/fixtures/Graphene.constraints.json
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:695f8accde93141378deed9495df5a4cc8b3db321ca43891729ee072aaa5fd0b
+size 230
diff --git a/tests/fixtures/Graphene.json b/tests/fixtures/Graphene.json
index b8c65821f..05d3c413a 100644
--- a/tests/fixtures/Graphene.json
+++ b/tests/fixtures/Graphene.json
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:43712ea8ada9350751be35d18f0ef92880a095be6536615f86b0c9ffd3b10dae
-size 1835
+oid sha256:787d94fcb49087bdf359e6e76702041e88dc0682284dba5f25e94d8a2d217a39
+size 1465
diff --git a/tests/fixtures/Na4Cl4.json b/tests/fixtures/Na4Cl4.json
index 11afb5dbd..9d6e07cff 100644
--- a/tests/fixtures/Na4Cl4.json
+++ b/tests/fixtures/Na4Cl4.json
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:6dbac6049c485dd790063d80419ca94160b2ee006463a3ae92e133023008746a
-size 2017
+oid sha256:61acc2683a5046e24a8e4f592498083eaed24a0c1ed854972492597ed56b0eba
+size 2800
diff --git a/tests/fixtures/Ni-hex.json b/tests/fixtures/Ni-hex.json
index 9d30a16da..a3e937ebc 100644
--- a/tests/fixtures/Ni-hex.json
+++ b/tests/fixtures/Ni-hex.json
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:0ac714e6f565c9bf4dd30c291a2e13d67da441b07cb5dcf6bb618537596702de
-size 1870
+oid sha256:e2521a77cb1fad2b7ad68527b6432246742c0010e8cca1d4595730b5125dbfbe
+size 1843
diff --git a/tests/fixtures/Si-slab.json b/tests/fixtures/Si-slab.json
index 3aeaad6e7..205b6c2e4 100644
--- a/tests/fixtures/Si-slab.json
+++ b/tests/fixtures/Si-slab.json
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:cb8fc82009d8a5c6d437bf17301e7a99760b51f756b4867360d48eaf5b7a7505
-size 1588
+oid sha256:9879224e228ba90f87690f894713cd4c768fdbcff4c009f81d988063b587eeaf
+size 2029
diff --git a/tests/fixtures/si-slab-100.json b/tests/fixtures/si-slab-100.json
index c94ff41a7..5ebb2efd4 100644
--- a/tests/fixtures/si-slab-100.json
+++ b/tests/fixtures/si-slab-100.json
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:1f674c41197c026e6945a7eebefc12420cb924b67b6fb246934003c2ed87de06
-size 1609
+oid sha256:f2cbbe28f42b6a061e0a057b120cd3f34c47122b42ec6336651ca439702cd073
+size 2050
diff --git a/tests/fixtures/si-slab-111-0-vacuum.json b/tests/fixtures/si-slab-111-0-vacuum.json
index 147ba2849..0a8b13364 100644
--- a/tests/fixtures/si-slab-111-0-vacuum.json
+++ b/tests/fixtures/si-slab-111-0-vacuum.json
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:d13761b40f49a864409fef85b011b0c1d5afe71fd8b6be63dc33811a344342af
-size 1569
+oid sha256:bcb50b3e71e3513518503d3d98a24570f79079df7107bbff64c36d84613b9705
+size 2010
diff --git a/tests/fixtures/si-slab-111-0.5-vacuum-gamma-120.json b/tests/fixtures/si-slab-111-0.5-vacuum-gamma-120.json
index ed3ebe149..e1e23e1bb 100644
--- a/tests/fixtures/si-slab-111-0.5-vacuum-gamma-120.json
+++ b/tests/fixtures/si-slab-111-0.5-vacuum-gamma-120.json
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:9f5905448537352e0af199e5d1b66a2d51585b6fc91ad2078809fda097a428ab
-size 1894
+oid sha256:d1b83b48b4400b5d125f72004705d520778e14f95e239239162a2f7fda0b7779
+size 2757
diff --git a/tests/fixtures/si-slab-111-0.5-vacuum-ratio.json b/tests/fixtures/si-slab-111-0.5-vacuum-ratio.json
index 317c4f562..f883c629e 100644
--- a/tests/fixtures/si-slab-111-0.5-vacuum-ratio.json
+++ b/tests/fixtures/si-slab-111-0.5-vacuum-ratio.json
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:26c02b987bfc67d4f6702cbb3cb1e1b3df30a1e6d4301aead75d1eba791a478e
-size 1609
+oid sha256:3320a17460b10fbff88ef4beb6684fe89af15f7f165b003467997451ceeea175
+size 2050
diff --git a/tests/fixtures/si-standata.json b/tests/fixtures/si-standata.json
index dd195f26b..7f4417371 100644
--- a/tests/fixtures/si-standata.json
+++ b/tests/fixtures/si-standata.json
@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:62175309558d4a75da4fd723ccb47dc558cdbb89fa224e61921c4ee2d5b48094
-size 1133
+oid sha256:ef37920119b9ae2ca66f73b24765bdfc8cb31786ffa07c54739359a4ad92be8e
+size 1447
diff --git a/tests/js/basis/basis.ts b/tests/js/basis/basis.ts
index 6c784b9f1..2572bc2fc 100644
--- a/tests/js/basis/basis.ts
+++ b/tests/js/basis/basis.ts
@@ -29,20 +29,21 @@ describe("Basis", () => {
     });
 
     it("should return true when basis is compared to its clone", () => {
-        const basis1 = new Material(Na4Cl4).Basis;
+        const basis1 = new Material(Na4Cl4).getBasis();
         const basis2 = basis1.clone();
         expect(basis1.isEqualTo(basis2)).to.be.equal(true);
         expect(basis1.hasEquivalentCellTo(basis2)).to.be.equal(true);
     });
 
     it("should return jsonified basis", () => {
-        const basis = new Material(Na4Cl4).Basis;
-        expect(basis.toJSON()).to.be.deep.almost.equal(Na4Cl4.basis);
+        const basis = new Material(Na4Cl4).getBasis();
+        const { constraints: _, ...basisJson } = basis.toJSON();
+        expect(basisJson).to.be.deep.almost.equal(Na4Cl4.basis);
     });
 
     it("should return true if cells are equal", () => {
-        const basis1 = new Material(Na4Cl4).Basis;
-        const basis2 = new Material(Na4Cl4Cartesian).Basis;
+        const basis1 = new Material(Na4Cl4).getBasis();
+        const basis2 = new Material(Na4Cl4Cartesian).getBasis();
         expect(basis1.hasEquivalentCellTo(basis2)).to.be.equal(true);
     });
 
@@ -120,8 +121,7 @@ describe("Basis", () => {
     });
 
     it("should convert crystal to cartesian", () => {
-        const basis = new Material(Na4Cl4).Basis;
-        basis.toCartesian();
+        const basis = new Material(Na4Cl4).getBasis().toCartesian();
         expect(basis.isInCartesianUnits).to.be.equal(true);
         expect(basis.coordinates).to.be.deep.almost.equal(Na4Cl4Cartesian.basis.coordinates);
     });
@@ -195,8 +195,10 @@ describe("Basis", () => {
      */
 
     it("should return standard representation", () => {
-        const basis = new Material(Na4Cl4Cartesian).Basis;
-        expect(basis.standardRepresentation).to.be.deep.almost.equal(Na4Cl4.basis);
+        const basis = new Material(Na4Cl4Cartesian).getBasis();
+        const standardRepresentation = { ...basis.standardRepresentation };
+        delete (standardRepresentation as { constraints?: unknown }).constraints;
+        expect(standardRepresentation).to.be.deep.almost.equal(Na4Cl4.basis);
     });
 
     /**
diff --git a/tests/js/fixtures.ts b/tests/js/fixtures.ts
index 697c34323..0b2a22ee3 100644
--- a/tests/js/fixtures.ts
+++ b/tests/js/fixtures.ts
@@ -1,4 +1,8 @@
-import { AtomicConstraintsSchema, BasisSchema, MaterialSchema } from "@mat3ra/esse/dist/js/types";
+import {
+    AtomicConstraintsSchema,
+    BasisSchema,
+    MaterialHashedSchema,
+} from "@mat3ra/esse/dist/js/types";
 import { MaterialStandata } from "@mat3ra/standata";
 import fs from "fs";
 import path from "path";
@@ -8,9 +12,10 @@ import atomicConstraints_JSON from "../fixtures/atomic-constraints.json";
 import C2H4_JSON from "../fixtures/C2H4.json";
 import C2H4Translated_JSON from "../fixtures/C2H4-translated.json";
 import FeLiSiBasis_JSON from "../fixtures/FeLiSi-basis.json";
+import FeOConstraints_JSON from "../fixtures/FeO.constraints.json";
 import FeO_JSON from "../fixtures/FeO.json";
-
 import Ge2Basis_JSON from "../fixtures/Ge2-basis.json";
+import GrapheneConstraints_JSON from "../fixtures/Graphene.constraints.json";
 import Graphene_JSON from "../fixtures/Graphene.json";
 import H2HFinal_JSON from "../fixtures/H2+H-final.json";
 import H2HImage_JSON from "../fixtures/H2+H-image.json";
@@ -28,35 +33,37 @@ import SiSlab111Gamma120_JSON from "../fixtures/si-slab-111-0.5-vacuum-gamma-120
 import SiSlab111_JSON from "../fixtures/si-slab-111-0.5-vacuum-ratio.json";
 import SiSlab111NoVacuum_JSON from "../fixtures/si-slab-111-0-vacuum.json";
 import Silicon_JSON from "../fixtures/si-standata.json";
-
 import SiSupercell_JSON from "../fixtures/Si-supercell.json";
 import Si2Basis_JSON from "../fixtures/Si2-basis.json";
 import Si2BasisRepeated_JSON from "../fixtures/Si2-basis-repeated.json";
 import Zr1H23Zr1H1_JSON from "../fixtures/Zr1H23Zr1H1.json";
 
-// Material
-const Silicon = Silicon_JSON as unknown as MaterialSchema;
-const SiSupercell = SiSupercell_JSON as unknown as MaterialSchema;
-const SiSlab = SiSlab_JSON as unknown as MaterialSchema;
-const SiSlab100 = SiSlab100_JSON as unknown as MaterialSchema;
-const SiSlab111 = SiSlab111_JSON as unknown as MaterialSchema;
-const SiSlab111Gamma120 = SiSlab111Gamma120_JSON as unknown as MaterialSchema;
-const SiSlab111NoVacuum = SiSlab111NoVacuum_JSON as unknown as MaterialSchema;
-const FeO = FeO_JSON as unknown as MaterialSchema;
-const FeOStandata = MaterialStandata.getRuntimeDataConfigs().find(
-    (m: any) => m.name?.includes("FeO"),
-) as MaterialSchema;
-const Na4Cl4 = Na4Cl4_JSON as unknown as MaterialSchema;
-const Na4Cl4Cartesian = Na4Cl4Cartesian_JSON as unknown as MaterialSchema;
-const C2H4 = C2H4_JSON as unknown as MaterialSchema;
-const C2H4Translated = C2H4Translated_JSON as unknown as MaterialSchema;
-const Na = Na_JSON as unknown as MaterialSchema;
-const H2HInitial = H2HInitial_JSON as unknown as MaterialSchema;
-const H2HFinal = H2HFinal_JSON as unknown as MaterialSchema;
-const H2HImage = H2HImage_JSON as unknown as MaterialSchema;
-const Zr1H23Zr1H1 = Zr1H23Zr1H1_JSON as unknown as MaterialSchema;
-const Graphene = Graphene_JSON as unknown as MaterialSchema;
-const NiHex = NiHex_JSON as unknown as MaterialSchema;
+// Material (fixtures include hash; typed as MaterialHashedSchema for hash assertions).
+// Atomic constraints live in sibling `*.constraints.json` files when non-empty — never on basis.
+const Silicon = Silicon_JSON as unknown as MaterialHashedSchema;
+const SiSupercell = SiSupercell_JSON as unknown as MaterialHashedSchema;
+const SiSlab = SiSlab_JSON as unknown as MaterialHashedSchema;
+const SiSlab100 = SiSlab100_JSON as unknown as MaterialHashedSchema;
+const SiSlab111 = SiSlab111_JSON as unknown as MaterialHashedSchema;
+const SiSlab111Gamma120 = SiSlab111Gamma120_JSON as unknown as MaterialHashedSchema;
+const SiSlab111NoVacuum = SiSlab111NoVacuum_JSON as unknown as MaterialHashedSchema;
+const FeO = FeO_JSON as unknown as MaterialHashedSchema;
+const FeOConstraints = FeOConstraints_JSON as AtomicConstraintsSchema;
+const FeOStandata = MaterialStandata.getRuntimeDataConfigs().find((m: any) =>
+    m.name?.includes("FeO"),
+) as MaterialHashedSchema;
+const Na4Cl4 = Na4Cl4_JSON as unknown as MaterialHashedSchema;
+const Na4Cl4Cartesian = Na4Cl4Cartesian_JSON as unknown as MaterialHashedSchema;
+const C2H4 = C2H4_JSON as unknown as MaterialHashedSchema;
+const C2H4Translated = C2H4Translated_JSON as unknown as MaterialHashedSchema;
+const Na = Na_JSON as unknown as MaterialHashedSchema;
+const H2HInitial = H2HInitial_JSON as unknown as MaterialHashedSchema;
+const H2HFinal = H2HFinal_JSON as unknown as MaterialHashedSchema;
+const H2HImage = H2HImage_JSON as unknown as MaterialHashedSchema;
+const Zr1H23Zr1H1 = Zr1H23Zr1H1_JSON as unknown as MaterialHashedSchema;
+const Graphene = Graphene_JSON as unknown as MaterialHashedSchema;
+const GrapheneConstraints = GrapheneConstraints_JSON as AtomicConstraintsSchema;
+const NiHex = NiHex_JSON as unknown as MaterialHashedSchema;
 
 // Basis
 const Si2Basis = Si2Basis_JSON as BasisSchema;
@@ -84,6 +91,7 @@ export {
     Si2BasisRepeated,
     // Other
     FeO,
+    FeOConstraints,
     FeOStandata,
     Na4Cl4,
     Na4Cl4Cartesian,
@@ -102,6 +110,7 @@ export {
     H2HImage,
     Zr1H23Zr1H1,
     Graphene,
+    GrapheneConstraints,
     NiHex,
 };
 
diff --git a/tests/js/material.test.ts b/tests/js/material.test.ts
index aeab5a45f..3ba21a0d1 100644
--- a/tests/js/material.test.ts
+++ b/tests/js/material.test.ts
@@ -1,6 +1,9 @@
+import type { MaterialHashedSchema } from "@mat3ra/esse/dist/js/types";
 import { expect } from "chai";
 
 import { Material } from "../../src/js/material";
+import { MaterialHashed } from "../../src/js/material_hashed";
+import expectedHashes from "../fixtures/hashes.json";
 import { FeOStandata, Graphene, Na4Cl4, Silicon } from "./fixtures";
 
 const newBasisXYZ = `Si     0.000000    0.000000    0.000000
@@ -16,27 +19,181 @@ describe("Material", () => {
     it("should return cloned material", () => {
         const material = new Material(Silicon);
         const clonedMaterial = material.clone();
-        clonedMaterial.setBasis(newBasisXYZ, "xyz", clonedMaterial.Basis.units);
-        expect(clonedMaterial.Basis.elements).to.have.lengthOf(2);
+        clonedMaterial.setBasis(newBasisXYZ, "xyz", clonedMaterial.getBasis().units);
+        expect(clonedMaterial.getBasis().elements).to.have.lengthOf(2);
     });
 
+    describe("atomic constraints", () => {
+        const constrainedBasisXYZ = `Li 0 0 0 1 1 0
+Li 0.25 0.25 0.25
+`;
+
+        it("keeps constraints in getBasisAsXyz after setBasis strips them from basis JSON", () => {
+            const material = new Material(Silicon);
+            material.setBasis(constrainedBasisXYZ, "xyz", "crystal");
+
+            expect(material.basis).to.not.have.property("constraints");
+            expect(material.getBasisAsXyz()).to.include("1 1 0");
+            expect(material.getBasisAsXyz()).to.include("1 1 1");
+        });
+
+        it("keeps constraints in getBasisAsXyz when toJSON omits them (client CoreMaterial path)", () => {
+            const material = new Material(Silicon);
+            material.setBasis(constrainedBasisXYZ, "xyz", "crystal");
+
+            // Simulate CoreMaterial client toJSON(): return raw _json without constraints.
+            material.toJSON = () => material._json;
+
+            expect(material.toJSON().basis).to.not.have.property("constraints");
+            expect(material.getBasisAsXyz()).to.include(
+                "Li     0.000000    0.000000    0.000000 1 1 0",
+            );
+            expect(material.getBasisAsXyz()).to.include(
+                "Li     0.250000    0.250000    0.250000 1 1 1",
+            );
+        });
+
+        it("toJSON never embeds constraints on basis", () => {
+            const material = new Material(Silicon);
+            material.setBasis(constrainedBasisXYZ, "xyz", "crystal");
+
+            expect(material.toJSON().basis).to.not.have.property("constraints");
+            expect(material.constraints).to.have.lengthOf(2);
+        });
+
+        it("accepts constraints only as the second constructor argument", () => {
+            const material = new Material(Silicon);
+            material.setBasis(constrainedBasisXYZ, "xyz", "crystal");
+            const { constraints } = material.getBasis();
+
+            // Embedded basis.constraints are not used; only the second arg hydrates this.constraints.
+            const fromSecondArg = new Material(
+                { ...Silicon, basis: { ...material.basis } },
+                constraints,
+            );
+            expect(fromSecondArg.constraints).to.deep.equal(constraints);
+            expect(fromSecondArg.getBasisAsXyz()).to.include("1 1 0");
+            expect(fromSecondArg.getBasisAsXyz()).to.include("1 1 1");
+            expect(fromSecondArg.toJSON().basis).to.not.have.property("constraints");
+        });
+
+        it("rehydrates private constraints via setBasisConstraintsFromArrayOfObjects", () => {
+            const material = new Material(Silicon);
+            material.setBasis(constrainedBasisXYZ, "xyz", "crystal");
+            const { constraints } = material.getBasis();
+
+            const reloaded = new Material({
+                ...Silicon,
+                basis: { ...material.basis },
+            });
+            reloaded.setBasisConstraintsFromArrayOfObjects(constraints);
+
+            expect(reloaded.getBasisAsXyz()).to.include("1 1 0");
+            expect(reloaded.getBasisAsXyz()).to.include("1 1 1");
+        });
+
+        it("preserves constraints across clone via second constructor argument", () => {
+            const material = new Material(Silicon);
+            material.setBasis(constrainedBasisXYZ, "xyz", "crystal");
+            material.toJSON = () => material._json;
+
+            const cloned = material.clone();
+            expect(cloned.getBasisAsXyz()).to.include("1 1 0");
+            expect(cloned.toJSON().basis).to.not.have.property("constraints");
+        });
+
+        it("serializes constraints via getAsPOSCAR separate from basis JSON", () => {
+            const material = new Material(Silicon);
+            material.setBasis(constrainedBasisXYZ, "xyz", "crystal");
+
+            expect(material.toJSON().basis).to.not.have.property("constraints");
+            const poscar = material.getAsPOSCAR(true);
+            expect(poscar).to.include("Selective dynamics");
+            expect(poscar).to.match(/T\s+T\s+F/);
+        });
+    });
+});
+
+describe("MaterialHashed", () => {
     describe("calculateHash", () => {
         [
             { name: "Silicon", fixture: Silicon },
             { name: "Graphene", fixture: Graphene },
         ].forEach(({ name, fixture }) => {
             it(`should match expected hash for ${name}`, () => {
-                const material = new Material(fixture);
-                expect(material.calculateHash()).to.equal((fixture as any).hash);
-                expect(material.scaledHash).to.equal((fixture as any).scaledHash);
+                const material = new MaterialHashed(fixture);
+                expect(material.calculateHash()).to.equal(fixture.hash);
+                expect(material.scaledHash).to.equal(fixture.scaledHash);
             });
         });
 
         it("should match expected hash for FeO (standata)", () => {
-            const expectedHashes = require("../../fixtures/hashes.json");
-            const material = new Material(FeOStandata);
+            const material = new MaterialHashed(FeOStandata);
             expect(material.calculateHash()).to.equal(expectedHashes.FeO.hash);
-            expect(material.scaledHash).to.equal(expectedHashes.FeO.scaledHash);
+            expect(material.calculateHash("", true)).to.equal(expectedHashes.FeO.scaledHash);
+        });
+
+        it("should persist hash on the instance and refresh after mutation", () => {
+            const material = new MaterialHashed(Silicon);
+            expect(material.hash).to.equal(Silicon.hash);
+            material.setBasis(newBasisXYZ, "xyz", material.getBasis().units);
+            expect(material.hash).to.equal(material.calculateHash());
+            expect(material.hash).to.not.equal(Silicon.hash);
+        });
+
+        it("should refresh hash when basis or lattice setters are used directly", () => {
+            const material = new MaterialHashed(Silicon);
+            const previousHash = material.hash;
+
+            material.basis = {
+                ...material.basis,
+                elements: [
+                    { id: 0, value: "Si" },
+                    { id: 1, value: "Ge" },
+                ],
+            };
+            expect(material.hash).to.equal(material.calculateHash());
+            expect(material.hash).to.not.equal(previousHash);
+
+            const hashAfterBasisChange = material.hash;
+            material.lattice = {
+                ...material.lattice,
+                a: material.lattice.a + 0.1,
+            };
+            expect(material.hash).to.equal(material.calculateHash());
+            expect(material.hash).to.not.equal(hashAfterBasisChange);
+        });
+
+        it("should refresh hash after setLattice", () => {
+            const material = new MaterialHashed(Silicon);
+            const previousHash = material.hash;
+
+            material.setLattice({
+                ...material.lattice,
+                a: material.lattice.a + 0.1,
+            });
+            expect(material.hash).to.equal(material.calculateHash());
+            expect(material.hash).to.not.equal(previousHash);
+        });
+    });
+
+    describe("generic schema wrapper", () => {
+        type WiderMaterialHashedSchema = MaterialHashedSchema & { webappOnly?: string };
+
+        class WiderMaterialHashed extends MaterialHashed<WiderMaterialHashedSchema> {}
+
+        it("allows subclasses to widen _json typing and storage", () => {
+            const material = new WiderMaterialHashed(Silicon);
+
+            material._json.webappOnly = "webapp-value";
+            expect(material._json.webappOnly).to.equal("webapp-value");
+
+            // toJSON rebuilds from schema-shaped fields; _json retains widened keys.
+            expect(material.toJSON().name).to.equal(Silicon.name);
+            expect(material._json.webappOnly).to.equal("webapp-value");
+
+            material._json.webappOnly = "updated";
+            expect(material._json.webappOnly).to.equal("updated");
         });
     });
 });
diff --git a/tests/js/parsers/espresso.ts b/tests/js/parsers/espresso.ts
index 7d9a2d1b6..88da0f23a 100644
--- a/tests/js/parsers/espresso.ts
+++ b/tests/js/parsers/espresso.ts
@@ -1,4 +1,3 @@
-import { MaterialSchema } from "@mat3ra/esse/dist/js/types";
 import { expect } from "chai";
 
 import { Material } from "../../../src/js/material";
@@ -8,8 +7,8 @@ import { Silicon, SiPWSCFInput } from "../fixtures";
 describe("Parsers:Espresso", () => {
     it("should return textual representation of a material according to QE pw.x input format", () => {
         const material = new Material(Silicon);
-        expect(parsers.espresso.toEspressoFormat(material as MaterialSchema)).to.be.equal(
-            SiPWSCFInput,
-        );
+        expect(
+            parsers.espresso.toEspressoFormat(material.toJSON(), material.constraints),
+        ).to.be.equal(SiPWSCFInput);
     });
 });
diff --git a/tests/js/parsers/native_formats.ts b/tests/js/parsers/native_formats.ts
index 1210b73ca..c2f105857 100644
--- a/tests/js/parsers/native_formats.ts
+++ b/tests/js/parsers/native_formats.ts
@@ -4,7 +4,7 @@ import { Utils } from "@mat3ra/utils";
 import { expect } from "chai";
 
 import nativeFormatParsers from "../../../src/js/parsers/native_format_parsers";
-import { Graphene, GraphenePoscar, NiHex, NiHexPoscar } from "../fixtures";
+import { Graphene, GrapheneConstraints, GraphenePoscar, NiHex, NiHexPoscar } from "../fixtures";
 
 const { assertDeepAlmostEqual } = Utils.assertion;
 
@@ -15,17 +15,21 @@ describe("Parsers.NativeFormat", () => {
     });
 
     it("should return a material config for graphene from a poscar", () => {
-        const poscar = GraphenePoscar;
-        const config = nativeFormatParsers.convertFromNativeFormat(poscar);
+        const { constraints, ...config } =
+            nativeFormatParsers.convertFromNativeFormat(GraphenePoscar);
+
         assertDeepAlmostEqual(config, Graphene, ["basis.labels", "lattice"]);
         assertDeepAlmostEqual(config.lattice, Graphene.lattice, ["type"]);
+        expect(constraints).to.deep.equal(GrapheneConstraints);
     });
 
     it("should return a material config for Ni hex from a poscar", () => {
-        const poscar = NiHexPoscar;
-        const config = nativeFormatParsers.convertFromNativeFormat(poscar);
+        const { constraints, ...config } = nativeFormatParsers.convertFromNativeFormat(NiHexPoscar);
+
         assertDeepAlmostEqual(config, NiHex, ["lattice", "basis.labels"]);
-        assertDeepAlmostEqual(config.lattice, NiHex.lattice, ["type"]); // to omit "lattice.type" property
+        assertDeepAlmostEqual(config.lattice, NiHex.lattice, ["type"]);
+        // Empty selective-dynamics list is omitted from POSCAR parse output.
+        expect(constraints ?? []).to.deep.equal([]);
     });
 
     it("should throw an error for unknown format", () => {
diff --git a/tests/js/parsers/poscar.ts b/tests/js/parsers/poscar.ts
index 585c6d47d..ae99b08ba 100644
--- a/tests/js/parsers/poscar.ts
+++ b/tests/js/parsers/poscar.ts
@@ -81,7 +81,7 @@ direct
 
         const material = new Material(Silicon);
         const clonedMaterial = material.clone();
-        clonedMaterial.setBasis(newBasisXYZ, "xyz", clonedMaterial.Basis.units);
+        clonedMaterial.setBasis(newBasisXYZ, "xyz", clonedMaterial.getBasis().units);
 
         const poscar = clonedMaterial.getAsPOSCAR(true);
         expect(poscar).to.be.equal(poscarConstraints);
diff --git a/tests/js/parsers/xyz.ts b/tests/js/parsers/xyz.ts
index a38c43231..08ddc0bbe 100644
--- a/tests/js/parsers/xyz.ts
+++ b/tests/js/parsers/xyz.ts
@@ -1,4 +1,5 @@
 import { Utils } from "@mat3ra/utils";
+import { expect } from "chai";
 
 import parsers from "../../../src/js/parsers/parsers";
 import { FeO, Silicon } from "../fixtures";
@@ -21,12 +22,20 @@ describe("Parsers:XYZ", () => {
             "Fe2  0.50  0.50  0.50  1 1 1\n" +
             "O    0.25  0.25  0.25  1 1 1\n" +
             "O    0.75  0.75  0.75  1 1 1";
-        assertDeepAlmostEqual(parsers.xyz.toBasisConfig(text), FeO.basis, ["cell", "units"]);
+        assertDeepAlmostEqual(parsers.xyz.toBasisConfig(text), FeO.basis, [
+            "constraints",
+            "cell",
+            "units",
+        ]);
     });
 
     it("should return [true, true, true] as constraints for the line without any constraints", () => {
         const text = "Si 0 0 0 0 1 1\n Si 0.25 0.25 0.25";
         const basis = parsers.xyz.toBasisConfig(text);
+        expect(basis.constraints).to.be.an("array").with.lengthOf(2);
+        if (!basis.constraints) {
+            throw new Error("expected constraints on parsed XYZ basis");
+        }
         assertDeepAlmostEqual(basis.constraints[0].value, [false, true, true]);
         assertDeepAlmostEqual(basis.constraints[1].value, [true, true, true]);
     });
diff --git a/tests/js/tools/supercell.ts b/tests/js/tools/supercell.ts
index 57f54c6f4..c537b566b 100644
--- a/tests/js/tools/supercell.ts
+++ b/tests/js/tools/supercell.ts
@@ -44,7 +44,7 @@ direct
    0.625000000    0.250000000    0.250000000  Ge`;
         const material = new Material(Silicon);
         const clonedMaterial = material.clone();
-        clonedMaterial.setBasis(newBasisXYZ, "xyz", clonedMaterial.Basis.units);
+        clonedMaterial.setBasis(newBasisXYZ, "xyz", clonedMaterial.getBasis().units);
         const supercellConfig = Made.tools.supercell.generateConfig(clonedMaterial, [
             [2, 0, 0],
             [0, 1, 0],
diff --git a/tests/js/tools/surface.ts b/tests/js/tools/surface.ts
index 941475f9d..93b1bba21 100644
--- a/tests/js/tools/surface.ts
+++ b/tests/js/tools/surface.ts
@@ -8,6 +8,10 @@ import { Silicon, SiSlab100, SiSlab111, SiSlab111NoVacuum } from "../fixtures";
 
 const { assertDeepAlmostEqual } = Utils.assertion;
 
+const toJSONWithoutHash = (material: Material) => {
+    return material.toJSON();
+};
+
 const generateSlabWithVacuum = (slabConfig: SlabConfigSchema, vacuumRatio: number) => {
     const slabMaterial = new Material(slabConfig);
     const { outOfPlaneAxisIndex } = slabConfig;
@@ -90,9 +94,10 @@ describe("Tools:Surface", () => {
         const vacuumRatio = 0.5;
         const slabMaterial = generateSlabWithVacuum(slabConfig, vacuumRatio);
         const expectedSlabMaterial = new Material(SiSlab111);
-        const expectedMaterialJSON = expectedSlabMaterial.toJSON();
-        const slabMaterialJSON = slabMaterial.toJSON();
-        assertDeepAlmostEqual(expectedMaterialJSON, slabMaterialJSON);
+        assertDeepAlmostEqual(
+            toJSONWithoutHash(expectedSlabMaterial),
+            toJSONWithoutHash(slabMaterial),
+        );
     });
 
     it("should return slab (111) with vacuum for gamma = 60.001", () => {
@@ -108,8 +113,9 @@ describe("Tools:Surface", () => {
         const vacuumRatio = 0.5;
         const slabMaterial = generateSlabWithVacuum(slabConfig, vacuumRatio);
         const expectedSlabMaterial = new Material(SiSlab111);
-        const expectedMaterialJSON = expectedSlabMaterial.toJSON();
-        const slabMaterialJSON = slabMaterial.toJSON();
-        assertDeepAlmostEqual(expectedMaterialJSON, slabMaterialJSON);
+        assertDeepAlmostEqual(
+            toJSONWithoutHash(expectedSlabMaterial),
+            toJSONWithoutHash(slabMaterial),
+        );
     });
 });