Science Commit 5.

mearvk · mearvk · commit f0cc31a7b114 · 2026-07-14T17:30:38.000-04:00
diff --git a/modules/AE6E66/servlets/setup-db.sh b/modules/AE6E66/servlets/setup-db.sh
@@ -3,6 +3,8 @@
 # Creates nwe_ae6e66 database and tables
 # Usage: bash modules/AE6E66/servlets/setup-db.sh
 set -e
+# SAFE: Uses CREATE IF NOT EXISTS. Never drops or overwrites existing data.
+# Can be run repeatedly after git pull without risk to production databases.
 
 DB_USER="root"
 DB_PASS='$$Ironman1'
diff --git a/modules/black/presidential/Brarner.M.Alete/install/macos/populate-all.sh b/modules/black/presidential/Brarner.M.Alete/install/macos/populate-all.sh
@@ -1,4 +1,6 @@
 #!/usr/bin/env bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate ALL Tables (macOS)
 # Runs all population scripts in sequence.
 # Usage: bash install/macos/populate-all.sh
diff --git a/modules/black/presidential/Brarner.M.Alete/install/macos/populate-art.sh b/modules/black/presidential/Brarner.M.Alete/install/macos/populate-art.sh
@@ -1,4 +1,6 @@
 #!/usr/bin/env bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate Art Database (macOS)
 # Usage: bash install/macos/populate-art.sh
 set -e
diff --git a/modules/black/presidential/Brarner.M.Alete/install/macos/populate-postal.sh b/modules/black/presidential/Brarner.M.Alete/install/macos/populate-postal.sh
@@ -1,4 +1,6 @@
 #!/usr/bin/env bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate Postal Database (macOS)
 # Usage: bash install/macos/populate-postal.sh
 set -e
diff --git a/modules/black/presidential/Brarner.M.Alete/install/macos/populate-publications.sh b/modules/black/presidential/Brarner.M.Alete/install/macos/populate-publications.sh
@@ -1,4 +1,6 @@
 #!/usr/bin/env bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate Publications Database (macOS)
 # Usage: bash install/macos/populate-publications.sh
 set -e
diff --git a/modules/black/presidential/Brarner.M.Alete/install/macos/populate-science-db.sh b/modules/black/presidential/Brarner.M.Alete/install/macos/populate-science-db.sh
@@ -1,4 +1,6 @@
 #!/bin/bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate Science Database (macOS)
 # Same as Linux populate script — macOS uses same bash/mysql tools.
 # Usage: bash install/macos/populate-science-db.sh
diff --git a/modules/black/presidential/Brarner.M.Alete/install/macos/populate-ssa.sh b/modules/black/presidential/Brarner.M.Alete/install/macos/populate-ssa.sh
@@ -1,4 +1,6 @@
 #!/usr/bin/env bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate SSA Database (macOS)
 # Usage: bash install/macos/populate-ssa.sh
 set -e
diff --git a/modules/black/presidential/Brarner.M.Alete/install/populate-all.sh b/modules/black/presidential/Brarner.M.Alete/install/populate-all.sh
@@ -1,4 +1,6 @@
 #!/bin/bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES/DROPS tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate ALL Tables (Linux/macOS)
 # Runs all population scripts in sequence.
 # Usage: bash install/populate-all.sh
diff --git a/modules/black/presidential/Brarner.M.Alete/install/populate-art.sh b/modules/black/presidential/Brarner.M.Alete/install/populate-art.sh
@@ -1,4 +1,6 @@
 #!/bin/bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES/DROPS tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate Art Museum Data (Linux/macOS)
 # Inserts museum and artwork records into BrarnerScience.art_works
 # Usage: bash install/populate-art.sh
diff --git a/modules/black/presidential/Brarner.M.Alete/install/populate-kingdoms.sh b/modules/black/presidential/Brarner.M.Alete/install/populate-kingdoms.sh
@@ -1,4 +1,6 @@
 #!/bin/bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES/DROPS tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # ============================================================================
 # Brarner.M.Alete™ — Populate Plantae, Fungi, Protista from GBIF
 # Downloads taxonomy hierarchies (phylum → class → order → family) from the
diff --git a/modules/black/presidential/Brarner.M.Alete/install/populate-legal.sh b/modules/black/presidential/Brarner.M.Alete/install/populate-legal.sh
@@ -1,4 +1,6 @@
 #!/bin/bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES/DROPS tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate Legal Database from CSV/RDNS data
 # Creates legal tables and loads US Code, case law, precedent, public laws, counts
 # Usage: bash install/populate-legal.sh
diff --git a/modules/black/presidential/Brarner.M.Alete/install/populate-postal.sh b/modules/black/presidential/Brarner.M.Alete/install/populate-postal.sh
@@ -1,4 +1,6 @@
 #!/bin/bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES/DROPS tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate Postal Data (Linux/macOS)
 # Downloads US ZIP code data and inserts into BrarnerScience.postal
 # Usage: bash install/populate-postal.sh
diff --git a/modules/black/presidential/Brarner.M.Alete/install/populate-publications.sh b/modules/black/presidential/Brarner.M.Alete/install/populate-publications.sh
@@ -1,4 +1,6 @@
 #!/bin/bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES/DROPS tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate Publications Data (Linux/macOS)
 # Inserts scientific publication records into BrarnerScience.publications
 # Usage: bash install/populate-publications.sh
diff --git a/modules/black/presidential/Brarner.M.Alete/install/populate-science-db.sh b/modules/black/presidential/Brarner.M.Alete/install/populate-science-db.sh
@@ -1,4 +1,6 @@
 #!/bin/bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES/DROPS tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate Science Database from CSV/XML source data
 # Reads species config.xml files and inserts into BrarnerScience.species
 # Usage: bash install/populate-science-db.sh
diff --git a/modules/black/presidential/Brarner.M.Alete/install/populate-ssa.sh b/modules/black/presidential/Brarner.M.Alete/install/populate-ssa.sh
@@ -1,4 +1,6 @@
 #!/bin/bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES/DROPS tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate SSA Data (Linux/macOS)
 # Creates SSA table and seeds with office location data.
 # Usage: bash install/populate-ssa.sh
diff --git a/modules/black/presidential/Brarner.M.Alete/install/populate-taxonomy-defaults.sh b/modules/black/presidential/Brarner.M.Alete/install/populate-taxonomy-defaults.sh
@@ -1,4 +1,6 @@
 #!/bin/bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES/DROPS tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # ============================================================================
 # Brarner.M.Alete™ — Populate Taxonomy Defaults (Remote Install)
 # Ensures every taxon in animalia has an entry in taxonomy_descriptions.
diff --git a/modules/black/presidential/Brarner.M.Alete/install/populate-taxonomy-descriptions.sh b/modules/black/presidential/Brarner.M.Alete/install/populate-taxonomy-descriptions.sh
@@ -1,4 +1,6 @@
 #!/bin/bash
+# ⚠️  DESTRUCTIVE: This script TRUNCATES/DROPS tables before reloading data.
+# Do NOT run as part of git-pull automation. Run manually only when reloading reference data.
 # Brarner.M.Alete™ — Populate Taxonomy Descriptions
 # Creates taxonomy_descriptions table and populates with Wikipedia-sourced descriptions
 # for kingdom, class, order, and family taxonomic levels.
diff --git a/modules/cia/servlets/setup-db.sh b/modules/cia/servlets/setup-db.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 set -e
+# SAFE: Uses CREATE IF NOT EXISTS. Never drops or overwrites existing data.
+# Can be run repeatedly after git pull without risk to production databases.
 echo "[*] Creating nwe_california_cia database..."
 mysql -u root -e "
 CREATE DATABASE IF NOT EXISTS nwe_california_cia;
diff --git a/modules/duke/servlets/setup-db.sh b/modules/duke/servlets/setup-db.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 set -e
+# SAFE: Uses CREATE IF NOT EXISTS. Never drops or overwrites existing data.
+# Can be run repeatedly after git pull without risk to production databases.
 echo "[*] Creating nwe_duke database..."
 mysql -u root -e "
 CREATE DATABASE IF NOT EXISTS nwe_duke;
diff --git a/modules/fbi/servlets/setup-db.sh b/modules/fbi/servlets/setup-db.sh
@@ -1,6 +1,8 @@
 #!/bin/bash
 # CaliforniaFBI™ — Setup MySQL database
 set -e
+# SAFE: Uses CREATE IF NOT EXISTS. Never drops or overwrites existing data.
+# Can be run repeatedly after git pull without risk to production databases.
 echo "[*] Creating nwe_california_fbi database..."
 
 mysql -u root -e "
diff --git a/modules/library/servlets/setup-db.sh b/modules/library/servlets/setup-db.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 set -e
+# SAFE: Uses CREATE IF NOT EXISTS. Never drops or overwrites existing data.
+# Can be run repeatedly after git pull without risk to production databases.
 echo "[*] Creating nwe_library database..."
 mysql -u root -e "
 CREATE DATABASE IF NOT EXISTS nwe_library;
diff --git a/modules/nsa/servlets/setup-db.sh b/modules/nsa/servlets/setup-db.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 set -e
+# SAFE: Uses CREATE IF NOT EXISTS. Never drops or overwrites existing data.
+# Can be run repeatedly after git pull without risk to production databases.
 echo "[*] Creating nwe_california_nsa database..."
 mysql -u root -e "
 CREATE DATABASE IF NOT EXISTS nwe_california_nsa;
diff --git a/modules/red/Futures/servlets/setup-db.sh b/modules/red/Futures/servlets/setup-db.sh
@@ -2,6 +2,8 @@
 # Futures™ — Setup MySQL Database
 # Usage: bash modules/Futures/servlets/setup-db.sh
 set -e
+# SAFE: Uses CREATE IF NOT EXISTS. Never drops or overwrites existing data.
+# Can be run repeatedly after git pull without risk to production databases.
 
 DB_USER="root"
 DB_PASS='$$Ironman1'
diff --git a/modules/red/Futures/sql/schema-44h.sql b/modules/red/Futures/sql/schema-44h.sql
@@ -15,7 +15,7 @@ USE pledge_44h;
 
 -- ── 44H Document Versions ─────────────────────────────────────
 
-CREATE TABLE document_versions (
+CREATE TABLE IF NOT EXISTS document_versions (
     id              BIGINT AUTO_INCREMENT PRIMARY KEY,
     content         TEXT NOT NULL,
     content_hash    VARCHAR(64) NOT NULL,
@@ -31,7 +31,7 @@ CREATE TABLE document_versions (
 
 -- ── Fetch Attempts (all attempts logged for security) ─────────
 
-CREATE TABLE fetch_attempts (
+CREATE TABLE IF NOT EXISTS fetch_attempts (
     id              BIGINT AUTO_INCREMENT PRIMARY KEY,
     attempted_ts    TIMESTAMP DEFAULT CURRENT_TIMESTAMP,
     http_code       INT,
diff --git a/modules/red/Futures/sql/schema.sql b/modules/red/Futures/sql/schema.sql
@@ -13,7 +13,7 @@ USE democratic_d500;
 
 -- ── Registrations ─────────────────────────────────────────────
 
-CREATE TABLE registrations (
+CREATE TABLE IF NOT EXISTS registrations (
     id              BIGINT AUTO_INCREMENT PRIMARY KEY,
     citizen_id      VARCHAR(64) NOT NULL,
     full_name       VARCHAR(255) NOT NULL,
@@ -27,7 +27,7 @@ CREATE TABLE registrations (
 
 -- ── Deregistrations ───────────────────────────────────────────
 
-CREATE TABLE deregistrations (
+CREATE TABLE IF NOT EXISTS deregistrations (
     id                  BIGINT AUTO_INCREMENT PRIMARY KEY,
     registration_id     BIGINT NOT NULL,
     citizen_id          VARCHAR(64) NOT NULL,
@@ -40,7 +40,7 @@ CREATE TABLE deregistrations (
 
 -- ── Questions ─────────────────────────────────────────────────
 
-CREATE TABLE questions (
+CREATE TABLE IF NOT EXISTS questions (
     id              BIGINT AUTO_INCREMENT PRIMARY KEY,
     citizen_id      VARCHAR(64) NOT NULL,
     question_text   TEXT NOT NULL,
@@ -53,7 +53,7 @@ CREATE TABLE questions (
 
 -- ── Answers ───────────────────────────────────────────────────
 
-CREATE TABLE answers (
+CREATE TABLE IF NOT EXISTS answers (
     id              BIGINT AUTO_INCREMENT PRIMARY KEY,
     question_id     BIGINT NOT NULL,
     answer_text     TEXT NOT NULL,
@@ -65,7 +65,7 @@ CREATE TABLE answers (
 
 -- ── Speculation Requests ──────────────────────────────────────
 
-CREATE TABLE speculation_requests (
+CREATE TABLE IF NOT EXISTS speculation_requests (
     id              BIGINT AUTO_INCREMENT PRIMARY KEY,
     citizen_id      VARCHAR(64) NOT NULL,
     input_features  JSON NOT NULL,
@@ -77,7 +77,7 @@ CREATE TABLE speculation_requests (
 
 -- ── Speculation Results ───────────────────────────────────────
 
-CREATE TABLE speculation_results (
+CREATE TABLE IF NOT EXISTS speculation_results (
     id              BIGINT AUTO_INCREMENT PRIMARY KEY,
     request_id      BIGINT NOT NULL,
     closure_prob    FLOAT,
@@ -91,7 +91,7 @@ CREATE TABLE speculation_results (
 
 -- ── Tax Closures ──────────────────────────────────────────────
 
-CREATE TABLE tax_closures (
+CREATE TABLE IF NOT EXISTS tax_closures (
     id              BIGINT AUTO_INCREMENT PRIMARY KEY,
     case_number     VARCHAR(64) NOT NULL UNIQUE,
     citizen_id      VARCHAR(64) NOT NULL,
@@ -109,7 +109,7 @@ CREATE TABLE tax_closures (
 
 -- ── Defense Cases ─────────────────────────────────────────────
 
-CREATE TABLE defense_cases (
+CREATE TABLE IF NOT EXISTS defense_cases (
     id              BIGINT AUTO_INCREMENT PRIMARY KEY,
     closure_id      BIGINT NOT NULL,
     strategy_id     INT,
diff --git a/scripts/compile-all-modules.sh b/scripts/compile-all-modules.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 # scripts/compile-all-modules.sh — Compile ALL NWE modules (core + external)
+# Compiles .java → .class into out/. Does NOT touch databases, configs, or runtime data.
+# Safe to run after every git pull.
 # Usage: bash scripts/compile-all-modules.sh
 set +e
 
diff --git a/scripts/web/deploy-all.sh b/scripts/web/deploy-all.sh
@@ -20,7 +20,7 @@ fi
 
 # Setup all databases before deploying
 echo ""
-echo "[*] Setting up all module databases..."
+echo "[*] Setting up all module databases (non-destructive — existing data preserved)..."
 bash "$SCRIPT_DIR/setup-all-databases.sh" 2>/dev/null || echo "[WARN] Some databases may need manual setup"
 
 # Patch WEB-INF and check SSL
diff --git a/scripts/web/post-clone.sh b/scripts/web/post-clone.sh
@@ -56,9 +56,9 @@ nwe_ensure_ufw
 nwe_open_ports
 echo "[OK] Firewall configured"
 
-# 5.5. Setup module databases
+# 5.5. Setup module databases (safe — uses CREATE IF NOT EXISTS, never drops)
 echo ""
-echo "[*] Setting up module databases..."
+echo "[*] Setting up module databases (non-destructive — existing data preserved)..."
 SETUP_SCRIPTS=(
     "modules/fbi/servlets/setup-db.sh"
     "modules/cia/servlets/setup-db.sh"
diff --git a/scripts/web/setup-all-databases.sh b/scripts/web/setup-all-databases.sh
@@ -1,6 +1,11 @@
 #!/bin/bash
 # NitroWebExpress™ — Setup All Module Databases
 # Creates ALL module databases and tables in one shot.
+#
+# SAFE TO RUN REPEATEDLY: Uses CREATE DATABASE/TABLE IF NOT EXISTS throughout.
+# Will NEVER drop, truncate, or overwrite existing databases or data.
+# New tables are added alongside existing ones. Existing rows are untouched.
+#
 # Usage: bash scripts/web/setup-all-databases.sh
 set -uo pipefail
 
