From 2ce345f0554bea1e6247eb8e2383afa1874e4001 Mon Sep 17 00:00:00 2001 From: mite-bot Date: Thu, 16 Apr 2026 08:28:05 +0200 Subject: [PATCH 1/5] Add submission UUID file --- .../6ce27288-395c-11f1-8f25-9b0d34c97d5b.json | 44 +++++++++++++++++++ 1 file changed, 44 insertions(+) create mode 100644 mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json diff --git a/mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json b/mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json new file mode 100644 index 00000000..48e7eea1 --- /dev/null +++ b/mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json @@ -0,0 +1,44 @@ +{ + "accession": "MITE9999999", + "status": "pending", + "changelog": [ + { + "version": "1", + "date": "2026-04-16", + "contributors": [ + "0000-0001-5730-3326" + ], + "reviewers": [ + "BBBBBBBBBBBBBBBBBBBBBBBB" + ], + "comment": "New entry." + } + ], + "enzyme": { + "name": "SorR", + "databaseIds": { + "uniprot": "Q9ADL7", + "genpept": "" + }, + "references": [ + "doi:" + ] + }, + "reactions": [ + { + "evidence": { + "evidenceCode": [], + "references": [ + "doi:" + ] + }, + "reactions": [ + { + "products": [ + "" + ] + } + ] + } + ] +} \ No newline at end of file From 424f5a632057a75dd0a80448205bdf8d1c0d90a8 Mon Sep 17 00:00:00 2001 From: mite-bot Date: Thu, 16 Apr 2026 08:33:10 +0200 Subject: [PATCH 2/5] Update submission --- .../6ce27288-395c-11f1-8f25-9b0d34c97d5b.json | 39 ++++++++++++------- 1 file changed, 25 insertions(+), 14 deletions(-) diff --git a/mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json b/mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json index 48e7eea1..5fdcd46a 100644 --- a/mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json +++ b/mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json @@ -16,29 +16,40 @@ ], "enzyme": { "name": "SorR", + "description": "reductase", + "references": [ + "doi:10.1016/S0378-1119(02)00396-7" + ], "databaseIds": { "uniprot": "Q9ADL7", - "genpept": "" - }, - "references": [ - "doi:" - ] + "genpept": "AAK19893.1", + "mibig": "BGC0000147" + } }, "reactions": [ { - "evidence": { - "evidenceCode": [], - "references": [ - "doi:" - ] - }, + "tailoring": [ + "Reduction" + ], + "description": "Possibily carry out the reaction from soraphen X to soraphen B (Figure 4A)", + "reactionSMARTS": "[#8:1]=[#6:16]1-[#8:17]-[#6@@:24](-[#6:25]-[#6:26]-[#6:27]-[#6:28]-[#6@@:31](-[#6@@:33](-[#6:34]-[#6:35]-[#6@:36](\\[#6:37])-[#6:3](-[#6@:5](-[#6@@:7](-[#6@:10](-[#6:13](-[#6@@:15]-1\\[#6:14])(-[#8])-[#8:11])/[#8:9]-[#6:8])\\[#8:6])/[#6:4])-[#8:2])/[#8:32])/[#8:30]-[#6:29])\\[#6:23]1:[#6:22]:[#6:21]:[#6:20]:[#6:19]:[#6:18]:1>>[#8:1]=[#6:16]1-[#8:17]-[#6@@:24](-[#6:25]-[#6:26]-[#6:27]-[#6:28]-[#6@@:31](-[#6@@:33](-[#6:34]-[#6:35]-[#6@:36](/[#6:37])-[#6@:3]2-[#6@:5](-[#6@@:7](-[#6@:10](-[#6@:13](-[#6@@:15]-1/[#6:14])(\\[#8:11])-[#8:2]/2)/[#8:9]-[#6:8])\\[#8:6])/[#6:4])\\[#8:32])\\[#8:30]-[#6:29])/[#6:23]1:[#6:18]:[#6:19]:[#6:20]:[#6:21]:[#6:22]:1", "reactions": [ { + "substrate": "CO[C@H]1CCCC[C@@H](c2ccccc2)OC(=O)[C@@H](C)C(O)(O)[C@H](OC)[C@@H](O)[C@H](C)C(O)[C@@H](C)CC[C@H]1O", "products": [ - "" - ] + "CO[C@H]1CCCC[C@@H](c2ccccc2)OC(=O)[C@@H](C)[C@@]2(O)O[C@H]([C@@H](C)[C@H](O)[C@H]2OC)[C@@H](C)CC[C@H]1O" + ], + "isIntermediate": false } - ] + ], + "evidence": { + "evidenceCode": [ + "Inference from genomic data and chemical structure" + ], + "references": [ + "doi:10.1016/S0378-1119(02)00396-7" + ] + } } ] } \ No newline at end of file From b0a7c697e3b1d1ccf5f33cd19ea9fad5d56d4287 Mon Sep 17 00:00:00 2001 From: mite-bot Date: Fri, 17 Jul 2026 10:19:57 +0200 Subject: [PATCH 3/5] Delete mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json --- .../6ce27288-395c-11f1-8f25-9b0d34c97d5b.json | 55 ------------------- 1 file changed, 55 deletions(-) delete mode 100644 mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json diff --git a/mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json b/mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json deleted file mode 100644 index 5fdcd46a..00000000 --- a/mite_data/data/6ce27288-395c-11f1-8f25-9b0d34c97d5b.json +++ /dev/null @@ -1,55 +0,0 @@ -{ - "accession": "MITE9999999", - "status": "pending", - "changelog": [ - { - "version": "1", - "date": "2026-04-16", - "contributors": [ - "0000-0001-5730-3326" - ], - "reviewers": [ - "BBBBBBBBBBBBBBBBBBBBBBBB" - ], - "comment": "New entry." - } - ], - "enzyme": { - "name": "SorR", - "description": "reductase", - "references": [ - "doi:10.1016/S0378-1119(02)00396-7" - ], - "databaseIds": { - "uniprot": "Q9ADL7", - "genpept": "AAK19893.1", - "mibig": "BGC0000147" - } - }, - "reactions": [ - { - "tailoring": [ - "Reduction" - ], - "description": "Possibily carry out the reaction from soraphen X to soraphen B (Figure 4A)", - "reactionSMARTS": "[#8:1]=[#6:16]1-[#8:17]-[#6@@:24](-[#6:25]-[#6:26]-[#6:27]-[#6:28]-[#6@@:31](-[#6@@:33](-[#6:34]-[#6:35]-[#6@:36](\\[#6:37])-[#6:3](-[#6@:5](-[#6@@:7](-[#6@:10](-[#6:13](-[#6@@:15]-1\\[#6:14])(-[#8])-[#8:11])/[#8:9]-[#6:8])\\[#8:6])/[#6:4])-[#8:2])/[#8:32])/[#8:30]-[#6:29])\\[#6:23]1:[#6:22]:[#6:21]:[#6:20]:[#6:19]:[#6:18]:1>>[#8:1]=[#6:16]1-[#8:17]-[#6@@:24](-[#6:25]-[#6:26]-[#6:27]-[#6:28]-[#6@@:31](-[#6@@:33](-[#6:34]-[#6:35]-[#6@:36](/[#6:37])-[#6@:3]2-[#6@:5](-[#6@@:7](-[#6@:10](-[#6@:13](-[#6@@:15]-1/[#6:14])(\\[#8:11])-[#8:2]/2)/[#8:9]-[#6:8])\\[#8:6])/[#6:4])\\[#8:32])\\[#8:30]-[#6:29])/[#6:23]1:[#6:18]:[#6:19]:[#6:20]:[#6:21]:[#6:22]:1", - "reactions": [ - { - "substrate": "CO[C@H]1CCCC[C@@H](c2ccccc2)OC(=O)[C@@H](C)C(O)(O)[C@H](OC)[C@@H](O)[C@H](C)C(O)[C@@H](C)CC[C@H]1O", - "products": [ - "CO[C@H]1CCCC[C@@H](c2ccccc2)OC(=O)[C@@H](C)[C@@]2(O)O[C@H]([C@@H](C)[C@H](O)[C@H]2OC)[C@@H](C)CC[C@H]1O" - ], - "isIntermediate": false - } - ], - "evidence": { - "evidenceCode": [ - "Inference from genomic data and chemical structure" - ], - "references": [ - "doi:10.1016/S0378-1119(02)00396-7" - ] - } - } - ] -} \ No newline at end of file From c0a5df0bb477ea5025c10655a30429598db55e9a Mon Sep 17 00:00:00 2001 From: mite-bot Date: Fri, 17 Jul 2026 10:19:59 +0200 Subject: [PATCH 4/5] Add submission --- mite_data/data/MITE9999999.json | 61 +++++++++++++++++++++++++++++++++ 1 file changed, 61 insertions(+) create mode 100644 mite_data/data/MITE9999999.json diff --git a/mite_data/data/MITE9999999.json b/mite_data/data/MITE9999999.json new file mode 100644 index 00000000..9fbf15d8 --- /dev/null +++ b/mite_data/data/MITE9999999.json @@ -0,0 +1,61 @@ +{ + "accession": "MITE9999999", + "status": "active", + "comment": "Although SorR is homologous to reductase domains of PKSs, it could conceivably function in the reverse as an oxidase", + "changelog": [ + { + "version": "1", + "date": "2026-04-16", + "contributors": [ + "0000-0001-5730-3326" + ], + "reviewers": [ + "0000-0002-4540-6501" + ], + "comment": "Refine finding" + } + ], + "enzyme": { + "name": "SorR", + "description": "oxidoreductase", + "references": [ + "doi:10.1016/S0378-1119(02)00396-7" + ], + "databaseIds": { + "uniprot": "Q9ADL7", + "genpept": "AAK19893.1", + "mibig": "BGC0000147" + }, + "cofactors": { + "organic": [ + "NADP" + ] + } + }, + "reactions": [ + { + "tailoring": [ + "Reduction" + ], + "description": "Possibily oxidation of soraphen x, followed by hemiacetalization to soraphen B ", + "reactionSMARTS": "[#8:1]=[#6:16]1-[#8:17]-[#6@@:24](-[#6:25]-[#6:26]-[#6:27]-[#6:28]-[#6@@:31](-[#6@@:33](-[#6:34]-[#6:35]-[#6@:36](\\[#6:37])-[#6:3](-[#6@:5](-[#6@@:7](-[#6@:10](-[#6:13](-[#6@@:15]-1\\[#6:14])(-[#8])-[#8:11])/[#8:9]-[#6:8])\\[#8:6])/[#6:4])-[#8:2])/[#8:32])/[#8:30]-[#6:29])\\[#6:23]1:[#6:22]:[#6:21]:[#6:20]:[#6:19]:[#6:18]:1>>[#8:1]=[#6:16]1-[#8:17]-[#6@@:24](-[#6:25]-[#6:26]-[#6:27]-[#6:28]-[#6@@:31](-[#6@@:33](-[#6:34]-[#6:35]-[#6@:36](/[#6:37])-[#6@:3]2-[#6@:5](-[#6@@:7](-[#6@:10](-[#6@:13](-[#6@@:15]-1/[#6:14])(\\[#8:11])-[#8:2]/2)/[#8:9]-[#6:8])\\[#8:6])/[#6:4])\\[#8:32])\\[#8:30]-[#6:29])/[#6:23]1:[#6:18]:[#6:19]:[#6:20]:[#6:21]:[#6:22]:1", + "reactions": [ + { + "substrate": "CO[C@H]1CCCC[C@@H](c2ccccc2)OC(=O)[C@@H](C)C(O)(O)[C@H](OC)[C@@H](O)[C@H](C)C(O)[C@@H](C)CC[C@H]1O", + "products": [ + "CO[C@H]1CCCC[C@@H](c2ccccc2)OC(=O)[C@@H](C)[C@@]2(O)O[C@H]([C@@H](C)[C@H](O)[C@H]2OC)[C@@H](C)CC[C@H]1O" + ], + "isIntermediate": false + } + ], + "evidence": { + "evidenceCode": [ + "Inference from genomic data and chemical structure" + ], + "references": [ + "doi:10.1016/S0378-1119(02)00396-7" + ] + } + } + ] +} \ No newline at end of file From b3e396708bb156bb3e6b9a6eeba6e20ffe6bfb8f Mon Sep 17 00:00:00 2001 From: "Mitja M. Zdouc" <95709447+mmzdouc@users.noreply.github.com> Date: Sat, 18 Jul 2026 07:11:41 +0200 Subject: [PATCH 5/5] Update and rename MITE9999999.json to MITE0000468.json --- mite_data/data/{MITE9999999.json => MITE0000468.json} | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) rename mite_data/data/{MITE9999999.json => MITE0000468.json} (94%) diff --git a/mite_data/data/MITE9999999.json b/mite_data/data/MITE0000468.json similarity index 94% rename from mite_data/data/MITE9999999.json rename to mite_data/data/MITE0000468.json index 9fbf15d8..ed055f50 100644 --- a/mite_data/data/MITE9999999.json +++ b/mite_data/data/MITE0000468.json @@ -1,5 +1,5 @@ { - "accession": "MITE9999999", + "accession": "MITE0000468", "status": "active", "comment": "Although SorR is homologous to reductase domains of PKSs, it could conceivably function in the reverse as an oxidase", "changelog": [ @@ -12,12 +12,12 @@ "reviewers": [ "0000-0002-4540-6501" ], - "comment": "Refine finding" + "comment": "New entry. Reviewer 1 refined findings." } ], "enzyme": { "name": "SorR", - "description": "oxidoreductase", + "description": "Oxidoreductase", "references": [ "doi:10.1016/S0378-1119(02)00396-7" ], @@ -58,4 +58,4 @@ } } ] -} \ No newline at end of file +}