diff --git a/.Rbuildignore b/.Rbuildignore index 4da9030..c510b70 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -3,3 +3,10 @@ ^data-raw$ ^LICENSE\.md$ ^README\.Rmd$ +^CITATION\.cff$ +^CLAUDE\.md$ +^_pkgdown\.yml$ +^docs$ +^\.github$ +^\.claude$ +^vignettes/articles$ diff --git a/DESCRIPTION b/DESCRIPTION index a40f319..fa75293 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -19,6 +19,15 @@ Imports: dplyr, readxl, openxlsx +Suggests: + gt, + gtExtras, + ggplot2, + tidyverse, + knitr, + rmarkdown, + scales +VignetteBuilder: knitr Date: 2025-06-02 URL: https://github.com/openwashdata/artesianwells BugReports: https://github.com/openwashdata/artesianwells/issues diff --git a/NAMESPACE b/NAMESPACE index 6ae9268..a06b9ab 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -1,2 +1,6 @@ # Generated by roxygen2: do not edit by hand +importFrom(dplyr,"%>%") +importFrom(openxlsx,write.xlsx) +importFrom(readr,read_csv) +importFrom(readxl,read_excel) diff --git a/R/artesianwells.R b/R/artesianwells.R index ae0e311..1fa3585 100644 --- a/R/artesianwells.R +++ b/R/artesianwells.R @@ -47,4 +47,9 @@ #' #' # Summary of districts #' table(artesianwells$district) +#' +#' @importFrom dplyr %>% +#' @importFrom readr read_csv +#' @importFrom readxl read_excel +#' @importFrom openxlsx write.xlsx "artesianwells" diff --git a/README.Rmd b/README.Rmd index 3070f3b..61d0934 100644 --- a/README.Rmd +++ b/README.Rmd @@ -59,6 +59,41 @@ This dataset is complemented by images captured at each site, accessible via permanent URLs, which provide photographic evidence of physical and infrastructural conditions. +## At a Glance + +```{r district-summary, echo=FALSE, message=FALSE} +library(artesianwells) +library(dplyr) +library(gt) +artesianwells |> + group_by(district) |> + summarise( + well_count = n(), + avg_fill_time = round(mean(seconds_to_fill_20L, na.rm = TRUE), 1), + wells_with_images = sum(!is.na(well_images)), + .groups = "drop" + ) |> + arrange(desc(well_count)) |> + gt::gt() |> + gt::cols_label( + district = "District", + well_count = "Total Wells", + avg_fill_time = "Avg. Fill Time (s)", + wells_with_images = "Wells with Images" + ) |> + gt::tab_header( + title = "Artesian Wells by District", + subtitle = "Summary of 44 documented well sites" + ) |> + gt::fmt_number( + columns = avg_fill_time, + decimals = 1 + ) |> + gt::as_raw_html() +``` + +📸 **[View the Image Gallery](https://openwashdata.github.io/artesianwells/articles/image-gallery.html)** - Explore photographs from all 43 documented well sites with interactive tables and visualizations. + **Potential Use Cases** Water Resource Planning and Management Government bodies and NGOs can @@ -158,6 +193,19 @@ readr::read_csv("data-raw/dictionary.csv") |> kableExtra::scroll_box(height = "200px") ``` +## Use Cases + +### Visual Documentation and Analysis + +The package includes a comprehensive [**Image Gallery**](https://openwashdata.github.io/artesianwells/articles/image-gallery.html) vignette that showcases photographs from 43 artesian well sites. This visual documentation helps: + +- **Field verification**: Compare physical infrastructure with reported data +- **Condition assessment**: Evaluate well structures and surrounding environments +- **Training materials**: Use real-world examples for capacity building +- **Stakeholder communication**: Present tangible evidence to decision-makers + +The gallery organizes wells by district and displays key metrics alongside images, making it easy to identify patterns and prioritize interventions. + ## Example ```{r} diff --git a/README.md b/README.md index 19597df..5f30f11 100644 --- a/README.md +++ b/README.md @@ -38,6 +38,79 @@ This dataset is complemented by images captured at each site, accessible via permanent URLs, which provide photographic evidence of physical and infrastructural conditions. +## At a Glance + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Artesian Wells by District
Summary of 44 documented well sites
DistrictTotal WellsAvg. Fill Time (s)Wells with Images
Machinga1062.910
Mangochi858.28
Blantyre5104.95
Chikwawa417.84
Ntchisi438.84
Karonga337.23
Neno30.03
Salima318.63
Balaka2153.72
Liwonde10.01
Mwanza10.00
+
+ +📸 **[View the Image +Gallery](https://openwashdata.github.io/artesianwells/articles/image-gallery.html)** - +Explore photographs from all 43 documented well sites with interactive +tables and visualizations. + **Potential Use Cases** Water Resource Planning and Management Government bodies and NGOs can @@ -113,7 +186,7 @@ artesianwells |> gt::as_raw_html() ``` -
+
@@ -829,6 +902,27 @@ Type of management in place for the water source if Other is selected +## Use Cases + +### Visual Documentation and Analysis + +The package includes a comprehensive [**Image +Gallery**](https://openwashdata.github.io/artesianwells/articles/image-gallery.html) +vignette that showcases photographs from 43 artesian well sites. This +visual documentation helps: + +- **Field verification**: Compare physical infrastructure with reported + data +- **Condition assessment**: Evaluate well structures and surrounding + environments +- **Training materials**: Use real-world examples for capacity building +- **Stakeholder communication**: Present tangible evidence to + decision-makers + +The gallery organizes wells by district and displays key metrics +alongside images, making it easy to identify patterns and prioritize +interventions. + ## Example ``` r diff --git a/_pkgdown.yml b/_pkgdown.yml index abf4d24..c3a92e5 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -4,6 +4,15 @@ template: includes: in_header: | + +navbar: + structure: + left: [intro, reference, articles] + right: [search, github] + components: + articles: + text: Gallery + href: articles/image-gallery.html home: links: @@ -31,3 +40,9 @@ reference: desc: "Access the artesianwells dataset" contents: - artesianwells + +articles: +- title: "Gallery" + navbar: ~ + contents: + - articles/image-gallery diff --git a/docs/404.html b/docs/404.html index 3dede47..ff6fc7c 100644 --- a/docs/404.html +++ b/docs/404.html @@ -31,7 +31,7 @@
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Artesian Wells Distribution
Wells with documented images
DistrictNumber of WellsAvg. Fill Time (seconds)
Machinga1062.9
Mangochi858.2
Blantyre5104.9
Chikwawa417.8
Ntchisi438.8
Karonga337.2
Neno30.0
Salima318.6
Balaka2153.7
Liwonde10.0
+
+
+ + + + +

Wells by District +

+

Machinga +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Machinga +
+10 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Sitola + +-15.1098, 35.2455 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+ + +Sitola + +-15.1133, 35.2368 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+ + +Sitola + +-15.0803, 35.2369 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Sitola + +-15.0813, 35.239 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Sitola + +-15.078, 35.2403 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Sitola + +-15.0787, 35.2427 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Sitola + +-15.0622, 35.2344 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+ + +Stola + +-15.1141, 35.2379 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Stola + +-15.1141, 35.2379 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Stola + +-15.1026, 35.2337 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+
+

Mangochi +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Mangochi +
+8 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Chimwala + +-14.7534, 35.1993 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+ + +Chimwala + +-14.7533, 35.1993 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+ + +Chimwala + +-14.7234, 35.1723 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+ + +Chimwala + +-14.7523, 35.202 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +Chimwala + +-14.4832, 35.2643 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+ + +Chimwala + +-14.7341, 35.189 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+ + +Chimwala + +-14.7358, 35.1906 + +Yes + +Fast (< 30s) + +Domestic + +No +
+ + +TA Chimwala + +-14.7526, 35.2042 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+
+

Blantyre +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Blantyre +
+5 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Machinjiri + +-15.7578, 35.0025 + +No + +Fast (< 30s) + +Other + +NA +
+ + +TA Chigalu + +-15.3765, 34.9852 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +TA Kapeni + +-15.6469, 35.0212 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+ + +TA Lundu + +-15.4958, 35.1109 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+ + +TA Somba + +-15.9172, 34.9365 + +Yes + +Moderate (30-60s) + +Domestic + +No +
+
+

Chikwawa +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Chikwawa +
+4 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Mankhuwila + +-16.2437, 35.0101 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+ + +Mgabu + +-16.3001, 34.8412 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +Mgabu + +-15.8398, 34.3957 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +TA Maseya + +-16.0369, 34.9116 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+
+

Ntchisi +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Ntchisi +
+4 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Chikho + +-13.4189, 34.058 + +NA + +Fast (< 30s) + +Domestic + +NA +
+ + +Kasakula + +-13.3739, 34.0964 + +Yes + +Fast (< 30s) + +Irrigation + +No +
+ + +Kasakula + +-13.3793, 34.0665 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+ + +Malenga + +-13.3333, 33.8693 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+
+

Karonga +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Karonga +
+3 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Kyungu + +-10.1265, 34.0035 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +Kyungu + +-9.9465, 33.8672 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+ + +Mwilangombe + +-10.3061, 34.1245 + +Yes + +Moderate (30-60s) + +Domestic + +NA +
+
+

Neno +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Neno +
+3 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Simon + +-15.2908, 34.9987 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +Simoni + +-15.3235, 34.978 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +Symon + +-15.2908, 34.9986 + +Yes + +Fast (< 30s) + +Domestic + +No +
+
+

Salima +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Salima +
+3 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Khombedza + +-13.6473, 34.1564 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+ + +Maganga + +-13.7322, 34.5687 + +Yes + +Fast (< 30s) + +Irrigation + +No +
+ + +Maganga + +-13.733, 34.5687 + +Yes + +Fast (< 30s) + +Irrigation + +No +
+
+

Balaka +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Balaka +
+2 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +TA Nkaya + +-15.2984, 35.0069 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+ + +TA Nkaya + +-15.2886, 35.0102 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+
+

Liwonde +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Liwonde +
+1 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Sitola + +-15.1105, 35.2576 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+
+

Image Grid View +

+

For a quick visual overview, here’s a grid displaying all well images organized in rows of 4:

+
+ +
+
+
+Balaka - TA Nkaya
+Balaka - TA Nkaya +
+
+
+Balaka - TA Nkaya
+Balaka - TA Nkaya +
+
+
+Blantyre - TA Chigalu
+Blantyre - TA Chigalu +
+
+
+Blantyre - TA Lundu
+Blantyre - TA Lundu +
+
+
+Blantyre - TA Kapeni
+Blantyre - TA Kapeni +
+
+
+Blantyre - TA Somba
+Blantyre - TA Somba +
+
+
+Liwonde - Sitola
+Liwonde - Sitola +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Chikwawa - TA Maseya
+Chikwawa - TA Maseya +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Machinga - Stola
+Machinga - Stola +
+
+
+Machinga - Stola
+Machinga - Stola +
+
+
+Machinga - Stola
+Machinga - Stola +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Chikwawa - Mankhuwila
+Chikwawa - Mankhuwila +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Karonga - Kyungu
+Karonga - Kyungu +
+
+
+Karonga - Mwilangombe
+Karonga - Mwilangombe +
+
+
+Ntchisi - Malenga
+Ntchisi - Malenga +
+
+
+Ntchisi - Chikho
+Ntchisi - Chikho +
+
+
+Ntchisi - Kasakula
+Ntchisi - Kasakula +
+
+
+Ntchisi - Kasakula
+Ntchisi - Kasakula +
+
+
+Salima - Maganga
+Salima - Maganga +
+
+
+Salima - Maganga
+Salima - Maganga +
+
+
+Salima - Khombedza
+Salima - Khombedza +
+
+
+Blantyre - Machinjiri
+Blantyre - Machinjiri +
+
+
+Karonga - Kyungu
+Karonga - Kyungu +
+
+
+Chikwawa - Mgabu
+Chikwawa - Mgabu +
+
+
+Chikwawa - Mgabu
+Chikwawa - Mgabu +
+
+
+Mangochi - Chimwala
+Mangochi - Chimwala +
+
+
+Mangochi - Chimwala
+Mangochi - Chimwala +
+
+
+Mangochi - Chimwala
+Mangochi - Chimwala +
+
+
+Mangochi - TA Chimwala
+Mangochi - TA Chimwala +
+
+
+Mangochi - Chimwala
+Mangochi - Chimwala +
+
+
+Mangochi - Chimwala
+Mangochi - Chimwala +
+
+
+Neno - Symon
+Neno - Symon +
+
+
+Neno - Simon
+Neno - Simon +
+
+
+

Usage Patterns +

+
+
Show code
+wells_with_images %>%
+  count(use_of_site) %>%
+  mutate(use_of_site = fct_reorder(use_of_site, n)) %>%
+  ggplot(aes(x = n, y = use_of_site, fill = use_of_site)) +
+  geom_col() +
+  geom_text(aes(label = n), hjust = -0.2) +
+  scale_x_continuous(expand = expansion(mult = c(0, 0.1))) +
+  labs(
+    x = "Number of Wells",
+    y = "Primary Use",
+    title = "Primary Usage of Artesian Wells"
+  ) +
+  theme_minimal() +
+  theme(legend.position = "none")
+
+
+
+ +
+
+Figure 1: Distribution of artesian wells by primary use +
+
+
+
+

Flow Rate Analysis +

+
+
Show code
+wells_with_images %>%
+  filter(!is.na(seconds_to_fill_20L)) %>%
+  group_by(district) %>%
+  summarise(
+    n_tested = n(),
+    min_time = min(seconds_to_fill_20L, na.rm = TRUE),
+    avg_time = mean(seconds_to_fill_20L, na.rm = TRUE),
+    max_time = max(seconds_to_fill_20L, na.rm = TRUE),
+    .groups = "drop"
+  ) %>%
+  gt() %>%
+  cols_label(
+    district = "District",
+    n_tested = "Wells Tested",
+    min_time = "Min (s)",
+    avg_time = "Average (s)",
+    max_time = "Max (s)"
+  ) %>%
+  fmt_number(
+    columns = c(min_time, avg_time, max_time),
+    decimals = 1
+  ) %>%
+  tab_header(
+    title = "Flow Rate Statistics",
+    subtitle = "Time to fill 20-liter container"
+  ) %>%
+  data_color(
+    columns = avg_time,
+    colors = scales::col_numeric(
+      palette = c("green", "yellow", "red"),
+      domain = NULL
+    )
+  )
+
+
+Table 2: Flow rate statistics by district +
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Flow Rate Statistics
Time to fill 20-liter container
DistrictWells TestedMin (s)Average (s)Max (s)
Balaka264.1153.7243.3
Blantyre50.0104.9361.4
Chikwawa40.017.841.4
Karonga324.637.246.7
Liwonde10.00.00.0
Machinga100.062.9221.3
Mangochi80.058.2140.5
Neno30.00.00.0
Ntchisi40.038.896.5
Salima30.018.637.5
+
+
+
+
+
+
+

Data Notes +

+
    +
  • Images are hosted on the mwater API and may require internet connection to display
    • +
  • Some wells have multiple images; only the first image is displayed in this gallery
    • +
  • Flow rate data is not available for all wells
    • +
  • The dataset was collected in April 2024
    • +
+ + + + + + + + + + + + diff --git a/docs/articles/image-gallery_files/figure-html/fig-usage-distribution-1.png b/docs/articles/image-gallery_files/figure-html/fig-usage-distribution-1.png new file mode 100644 index 0000000..053b9e6 Binary files /dev/null and b/docs/articles/image-gallery_files/figure-html/fig-usage-distribution-1.png differ diff --git a/docs/articles/image-gallery_files/libs/quarto-html/light-border.css b/docs/articles/image-gallery_files/libs/quarto-html/light-border.css new file mode 100644 index 0000000..2b25c61 --- /dev/null +++ b/docs/articles/image-gallery_files/libs/quarto-html/light-border.css @@ -0,0 +1 @@ +.tippy-box[data-theme~=light-border]{background-color:#fff;background-clip:padding-box;border:1px solid rgba(0,8,16,.15);color:#333;box-shadow:0 4px 14px -2px 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0===o&&(o=!1),e.addEventListener(t,n,o),r.push({node:e,eventType:t,handler:n,options:o})}return u(l).forEach((function(e){var n=e.destroy,a=e.enable,s=e.disable;e.destroy=function(e){void 0===e&&(e=!0),e&&o.forEach((function(e){e.destroy()})),o=[],r.forEach((function(e){var t=e.node,n=e.eventType,r=e.handler,o=e.options;t.removeEventListener(n,r,o)})),r=[],n()},e.enable=function(){a(),o.forEach((function(e){return e.enable()})),i=!1},e.disable=function(){s(),o.forEach((function(e){return e.disable()})),i=!0},function(e){var n=e.reference;v(n,"touchstart",d,t),v(n,"mouseover",d),v(n,"focusin",d),v(n,"click",d)}(e)})),l},F.hideAll=function(e){var t=void 0===e?{}:e,n=t.exclude,r=t.duration;U.forEach((function(e){var t=!1;if(n&&(t=g(n)?e.reference===n:e.popper===n.popper),!t){var o=e.props.duration;e.setProps({duration:r}),e.hide(),e.state.isDestroyed||e.setProps({duration:o})}}))},F.roundArrow='',F})); + diff --git a/docs/articles/index.html b/docs/articles/index.html new file mode 100644 index 0000000..abcd9f9 --- /dev/null +++ b/docs/articles/index.html @@ -0,0 +1,59 @@ + +Articles • artesianwells + Skip to contents + + +
+
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+ +

Articles

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+

Gallery

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+ +
Artesian Wells Image Gallery
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+

Crafted by Emmanuel Mhango.

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+

Site built with pkgdown 2.1.3.

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+ + + + + + + diff --git a/docs/authors.html b/docs/authors.html index fb1b662..8464ddc 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -16,7 +16,7 @@