From 2c36ed31e02cf43aac0eb79ebe991c7d43ddcde8 Mon Sep 17 00:00:00 2001 From: larnsce Date: Sun, 6 Jul 2025 20:58:10 +0200 Subject: [PATCH 1/8] Add image gallery vignette showcasing artesian well photos - Create vignettes/articles directory structure - Add image-gallery.qmd Quarto vignette - Display images in gt tables organized by district - Include 4-column image grid with CSS styling - Add flow rate analysis and usage pattern visualizations - Update DESCRIPTION with Suggests dependencies (gt, gtExtras, etc.) - Configure _pkgdown.yml to include the article - Add .gitignore for generated vignette files The vignette extracts images from mwater API URLs and presents them alongside key data points including location, flow rates, usage patterns, and management information. --- DESCRIPTION | 8 + _pkgdown.yml | 6 + vignettes/.gitignore | 3 + vignettes/articles/image-gallery.qmd | 336 +++++++++++++++++++++++++++ 4 files changed, 353 insertions(+) create mode 100644 vignettes/.gitignore create mode 100644 vignettes/articles/image-gallery.qmd diff --git a/DESCRIPTION b/DESCRIPTION index a40f319..426b902 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -19,6 +19,14 @@ Imports: dplyr, readxl, openxlsx +Suggests: + gt, + gtExtras, + ggplot2, + tidyverse, + knitr, + rmarkdown, + scales Date: 2025-06-02 URL: https://github.com/openwashdata/artesianwells BugReports: https://github.com/openwashdata/artesianwells/issues diff --git a/_pkgdown.yml b/_pkgdown.yml index abf4d24..58ba7d7 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -31,3 +31,9 @@ reference: desc: "Access the artesianwells dataset" contents: - artesianwells + +articles: +- title: "Gallery" + navbar: ~ + contents: + - image-gallery diff --git a/vignettes/.gitignore b/vignettes/.gitignore new file mode 100644 index 0000000..180e991 --- /dev/null +++ b/vignettes/.gitignore @@ -0,0 +1,3 @@ +*.html +*.R +*_files/ \ No newline at end of file diff --git a/vignettes/articles/image-gallery.qmd b/vignettes/articles/image-gallery.qmd new file mode 100644 index 0000000..7a60bdf --- /dev/null +++ b/vignettes/articles/image-gallery.qmd @@ -0,0 +1,336 @@ +--- +title: "Artesian Wells Image Gallery" +author: "openwashdata" +date: "`r Sys.Date()`" +format: + html: + toc: true + toc-depth: 2 + code-fold: true + code-summary: "Show code" +execute: + message: false + warning: false +--- + +```{r setup} +#| include: false +library(artesianwells) +library(tidyverse) +library(gt) +library(gtExtras) +``` + +## Introduction + +This vignette provides a visual showcase of the artesian wells documented in the dataset. The images are organized by district and displayed alongside key information about each well site. + +```{r data-prep} +# Prepare data with image URLs +wells_with_images <- artesianwells %>% + filter(!is.na(well_images)) %>% + mutate( + # Extract first image URL if multiple are separated by semicolons + first_well_image = str_extract(well_images, "^[^;]+"), + first_area_photo = if_else(!is.na(area_photos), + str_extract(area_photos, "^[^;]+"), + NA_character_) + ) %>% + select( + district, + traditional_authority, + latitude, + longitude, + has_structure, + well_structure_type, + seconds_to_fill_20L, + use_of_site, + river_nearby, + has_operator, + mgmt_type, + first_well_image, + first_area_photo + ) + +# Count wells by district +district_summary <- wells_with_images %>% + group_by(district) %>% + summarise( + well_count = n(), + avg_fill_time = round(mean(seconds_to_fill_20L, na.rm = TRUE), 1), + .groups = "drop" + ) %>% + arrange(desc(well_count)) +``` + +## Overview + +The dataset contains images for **`r nrow(wells_with_images)`** artesian well sites across **`r n_distinct(wells_with_images$district)`** districts in Malawi. + +```{r overview-table} +#| label: tbl-district-summary +#| tbl-cap: "Summary of artesian wells by district" + +district_summary %>% + gt() %>% + cols_label( + district = "District", + well_count = "Number of Wells", + avg_fill_time = "Avg. Fill Time (seconds)" + ) %>% + tab_header( + title = "Artesian Wells Distribution", + subtitle = "Wells with documented images" + ) %>% + fmt_number( + columns = avg_fill_time, + decimals = 1 + ) %>% + tab_style( + style = cell_fill(color = "lightblue"), + locations = cells_body(columns = well_count, rows = well_count > 5) + ) +``` + +## Wells by District + +```{r district-galleries} +#| output: asis +#| echo: false + +# Function to create a district section +create_district_section <- function(district_name, data) { + cat("\n\n### ", district_name, "\n\n") + + district_data <- data %>% + filter(district == district_name) %>% + arrange(traditional_authority) + + # Create the table with images + table_html <- district_data %>% + mutate( + location = paste0(round(latitude, 4), ", ", round(longitude, 4)), + fill_rate = case_when( + is.na(seconds_to_fill_20L) ~ "Not tested", + seconds_to_fill_20L < 30 ~ "Fast (< 30s)", + seconds_to_fill_20L < 60 ~ "Moderate (30-60s)", + TRUE ~ "Slow (> 60s)" + ) + ) %>% + select( + first_well_image, + traditional_authority, + location, + has_structure, + fill_rate, + use_of_site, + has_operator + ) %>% + gt() %>% + cols_label( + first_well_image = "Well Image", + traditional_authority = "Traditional Authority", + location = "Coordinates", + has_structure = "Structure", + fill_rate = "Fill Rate", + use_of_site = "Primary Use", + has_operator = "Operator" + ) %>% + tab_header( + title = paste0("Artesian Wells in ", district_name), + subtitle = paste0(nrow(district_data), " well sites documented") + ) %>% + fmt_image( + columns = first_well_image, + height = 150, + width = 150 + ) %>% + cols_width( + first_well_image ~ px(160), + traditional_authority ~ px(150), + location ~ px(120), + has_structure ~ px(80), + fill_rate ~ px(100), + use_of_site ~ px(100), + has_operator ~ px(80) + ) %>% + tab_style( + style = list( + cell_text(weight = "bold") + ), + locations = cells_column_labels() + ) %>% + tab_style( + style = cell_fill(color = "lightgreen"), + locations = cells_body( + columns = fill_rate, + rows = fill_rate == "Fast (< 30s)" + ) + ) %>% + tab_style( + style = cell_fill(color = "lightyellow"), + locations = cells_body( + columns = fill_rate, + rows = fill_rate == "Moderate (30-60s)" + ) + ) %>% + tab_style( + style = cell_fill(color = "lightcoral"), + locations = cells_body( + columns = fill_rate, + rows = fill_rate == "Slow (> 60s)" + ) + ) %>% + as_raw_html() + + cat(table_html) +} + +# Create sections for each district +for (dist in district_summary$district) { + create_district_section(dist, wells_with_images) +} +``` + +## Image Grid View + +For a quick visual overview, here's a grid displaying all well images organized in rows of 4: + +```{css} +#| echo: false +.image-grid { + display: grid; + grid-template-columns: repeat(4, 1fr); + gap: 10px; + margin: 20px 0; +} + +.image-item { + text-align: center; +} + +.image-item img { + width: 100%; + height: 150px; + object-fit: cover; + border-radius: 5px; + box-shadow: 0 2px 4px rgba(0,0,0,0.1); +} + +.image-caption { + font-size: 0.8em; + margin-top: 5px; + color: #666; +} + +@media (max-width: 768px) { + .image-grid { + grid-template-columns: repeat(2, 1fr); + } +} + +@media (max-width: 480px) { + .image-grid { + grid-template-columns: 1fr; + } +} +``` + +::: {.image-grid} +```{r} +#| output: asis +#| echo: false + +# Create image grid +wells_with_images %>% + mutate( + caption = paste0(district, " - ", traditional_authority) + ) %>% + select(first_well_image, caption) %>% + slice_head(n = 40) %>% # Show first 40 images + pmap(function(first_well_image, caption) { + cat(paste0( + '
', + '', caption, '', + '
', caption, '
', + '
\n' + )) + }) +``` +::: + +## Usage Patterns + +```{r usage-analysis} +#| label: fig-usage-distribution +#| fig-cap: "Distribution of artesian wells by primary use" + +wells_with_images %>% + count(use_of_site) %>% + mutate(use_of_site = fct_reorder(use_of_site, n)) %>% + ggplot(aes(x = n, y = use_of_site, fill = use_of_site)) + + geom_col() + + geom_text(aes(label = n), hjust = -0.2) + + scale_x_continuous(expand = expansion(mult = c(0, 0.1))) + + labs( + x = "Number of Wells", + y = "Primary Use", + title = "Primary Usage of Artesian Wells" + ) + + theme_minimal() + + theme(legend.position = "none") +``` + +## Flow Rate Analysis + +```{r flow-analysis} +#| label: tbl-flow-stats +#| tbl-cap: "Flow rate statistics by district" + +wells_with_images %>% + filter(!is.na(seconds_to_fill_20L)) %>% + group_by(district) %>% + summarise( + n_tested = n(), + min_time = min(seconds_to_fill_20L, na.rm = TRUE), + avg_time = mean(seconds_to_fill_20L, na.rm = TRUE), + max_time = max(seconds_to_fill_20L, na.rm = TRUE), + .groups = "drop" + ) %>% + gt() %>% + cols_label( + district = "District", + n_tested = "Wells Tested", + min_time = "Min (s)", + avg_time = "Average (s)", + max_time = "Max (s)" + ) %>% + fmt_number( + columns = c(min_time, avg_time, max_time), + decimals = 1 + ) %>% + tab_header( + title = "Flow Rate Statistics", + subtitle = "Time to fill 20-liter container" + ) %>% + data_color( + columns = avg_time, + colors = scales::col_numeric( + palette = c("green", "yellow", "red"), + domain = NULL + ) + ) +``` + +## Data Notes + +- Images are hosted on the mwater API and may require internet connection to display +- Some wells have multiple images; only the first image is displayed in this gallery +- Flow rate data is not available for all wells +- The dataset was collected in April 2024 + +## Session Info + +```{r session-info} +sessionInfo() +``` \ No newline at end of file From 45ecd09d724c9e0e00f6368d7fc59cde70d1208e Mon Sep 17 00:00:00 2001 From: larnsce Date: Sun, 6 Jul 2025 21:04:06 +0200 Subject: [PATCH 2/8] Fix vignette: remove Session Info and fix NULL output - Replace pmap() with pwalk() to avoid NULL output in image grid - Remove Session Info section from vignette - Cleaner output without unnecessary [[1]] NULL messages --- vignettes/articles/image-gallery.qmd | 10 ++-------- 1 file changed, 2 insertions(+), 8 deletions(-) diff --git a/vignettes/articles/image-gallery.qmd b/vignettes/articles/image-gallery.qmd index 7a60bdf..cba8813 100644 --- a/vignettes/articles/image-gallery.qmd +++ b/vignettes/articles/image-gallery.qmd @@ -248,7 +248,7 @@ wells_with_images %>% ) %>% select(first_well_image, caption) %>% slice_head(n = 40) %>% # Show first 40 images - pmap(function(first_well_image, caption) { + pwalk(function(first_well_image, caption) { cat(paste0( '
', '', caption, '', @@ -327,10 +327,4 @@ wells_with_images %>% - Images are hosted on the mwater API and may require internet connection to display - Some wells have multiple images; only the first image is displayed in this gallery - Flow rate data is not available for all wells -- The dataset was collected in April 2024 - -## Session Info - -```{r session-info} -sessionInfo() -``` \ No newline at end of file +- The dataset was collected in April 2024 \ No newline at end of file From 79354d5799880e8c9fdfc768c8b397a4a62ccd4e Mon Sep 17 00:00:00 2001 From: larnsce Date: Sun, 6 Jul 2025 21:08:03 +0200 Subject: [PATCH 3/8] Add image gallery to README and navigation menu - Add 'At a Glance' section with district summary table at the beginning - Create 'Use Cases' section highlighting the image gallery vignette - Update navbar in _pkgdown.yml to include Gallery link - Emphasize visual documentation benefits for stakeholders - Include summary statistics: wells per district, average fill times, image counts --- README.Rmd | 46 ++++++++++++++++++++++++++ README.md | 91 +++++++++++++++++++++++++++++++++++++++++++++++++++- _pkgdown.yml | 9 ++++++ 3 files changed, 145 insertions(+), 1 deletion(-) diff --git a/README.Rmd b/README.Rmd index 3070f3b..53e08f8 100644 --- a/README.Rmd +++ b/README.Rmd @@ -59,6 +59,39 @@ This dataset is complemented by images captured at each site, accessible via permanent URLs, which provide photographic evidence of physical and infrastructural conditions. +## At a Glance + +```{r district-summary, echo=FALSE, message=FALSE} +library(artesianwells) +library(dplyr) +library(gt) +artesianwells |> + group_by(district) |> + summarise( + well_count = n(), + avg_fill_time = round(mean(seconds_to_fill_20L, na.rm = TRUE), 1), + wells_with_images = sum(!is.na(well_images)), + .groups = "drop" + ) |> + arrange(desc(well_count)) |> + gt::gt() |> + gt::cols_label( + district = "District", + well_count = "Total Wells", + avg_fill_time = "Avg. Fill Time (s)", + wells_with_images = "Wells with Images" + ) |> + gt::tab_header( + title = "Artesian Wells by District", + subtitle = "Summary of 44 documented well sites" + ) |> + gt::fmt_number( + columns = avg_fill_time, + decimals = 1 + ) |> + gt::as_raw_html() +``` + **Potential Use Cases** Water Resource Planning and Management Government bodies and NGOs can @@ -158,6 +191,19 @@ readr::read_csv("data-raw/dictionary.csv") |> kableExtra::scroll_box(height = "200px") ``` +## Use Cases + +### Visual Documentation and Analysis + +The package includes a comprehensive [**Image Gallery**](https://openwashdata.github.io/artesianwells/articles/image-gallery.html) vignette that showcases photographs from 43 artesian well sites. This visual documentation helps: + +- **Field verification**: Compare physical infrastructure with reported data +- **Condition assessment**: Evaluate well structures and surrounding environments +- **Training materials**: Use real-world examples for capacity building +- **Stakeholder communication**: Present tangible evidence to decision-makers + +The gallery organizes wells by district and displays key metrics alongside images, making it easy to identify patterns and prioritize interventions. + ## Example ```{r} diff --git a/README.md b/README.md index 19597df..68ab85b 100644 --- a/README.md +++ b/README.md @@ -38,6 +38,74 @@ This dataset is complemented by images captured at each site, accessible via permanent URLs, which provide photographic evidence of physical and infrastructural conditions. +## At a Glance + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Artesian Wells by District
Summary of 44 documented well sites
DistrictTotal WellsAvg. Fill Time (s)Wells with Images
Machinga1062.910
Mangochi858.28
Blantyre5104.95
Chikwawa417.84
Ntchisi438.84
Karonga337.23
Neno30.03
Salima318.63
Balaka2153.72
Liwonde10.01
Mwanza10.00
+
+ **Potential Use Cases** Water Resource Planning and Management Government bodies and NGOs can @@ -113,7 +181,7 @@ artesianwells |> gt::as_raw_html() ``` -
+
@@ -829,6 +897,27 @@ Type of management in place for the water source if Other is selected +## Use Cases + +### Visual Documentation and Analysis + +The package includes a comprehensive [**Image +Gallery**](https://openwashdata.github.io/artesianwells/articles/image-gallery.html) +vignette that showcases photographs from 43 artesian well sites. This +visual documentation helps: + +- **Field verification**: Compare physical infrastructure with reported + data +- **Condition assessment**: Evaluate well structures and surrounding + environments +- **Training materials**: Use real-world examples for capacity building +- **Stakeholder communication**: Present tangible evidence to + decision-makers + +The gallery organizes wells by district and displays key metrics +alongside images, making it easy to identify patterns and prioritize +interventions. + ## Example ``` r diff --git a/_pkgdown.yml b/_pkgdown.yml index 58ba7d7..59f2d41 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -4,6 +4,15 @@ template: includes: in_header: | + +navbar: + structure: + left: [intro, reference, articles] + right: [search, github] + components: + articles: + text: Gallery + href: articles/image-gallery.html home: links: From 90ca7d39e7bec2a5734e7861c016413c5730e32f Mon Sep 17 00:00:00 2001 From: larnsce Date: Sun, 6 Jul 2025 21:09:49 +0200 Subject: [PATCH 4/8] =?UTF-8?q?Add=20Lars=20Sch=C3=B6bitz=20as=20author=20?= =?UTF-8?q?of=20image=20gallery=20vignette?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit - Include ORCID ID and email - Add affiliation to Global Health Engineering, ETH Zurich - Include GHE website URL --- vignettes/articles/image-gallery.qmd | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/vignettes/articles/image-gallery.qmd b/vignettes/articles/image-gallery.qmd index cba8813..ab84844 100644 --- a/vignettes/articles/image-gallery.qmd +++ b/vignettes/articles/image-gallery.qmd @@ -1,6 +1,12 @@ --- title: "Artesian Wells Image Gallery" -author: "openwashdata" +author: + - name: Lars Schöbitz + email: lschoebitz@ethz.ch + orcid: 0000-0003-2196-5015 + affiliation: + - name: Global Health Engineering, ETH Zurich + url: https://ghe.ethz.ch date: "`r Sys.Date()`" format: html: From 6f222d3f18d15d2ab3f3e3c2e54c95f5c6056989 Mon Sep 17 00:00:00 2001 From: larnsce Date: Sun, 6 Jul 2025 21:20:44 +0200 Subject: [PATCH 5/8] Fix R CMD check warnings and notes - Add VignetteBuilder: knitr to DESCRIPTION - Add vignettes/articles to .Rbuildignore (pkgdown-specific) - Update .Rbuildignore to exclude non-standard files - Add @importFrom statements to use imported packages - Update vignettes/.gitignore to exclude generated files - Package now passes R CMD check with 0 errors, 0 warnings, 0 notes --- .Rbuildignore | 7 +++++++ DESCRIPTION | 1 + NAMESPACE | 4 ++++ R/artesianwells.R | 5 +++++ man/artesianwells.Rd | 1 + vignettes/.gitignore | 4 +++- 6 files changed, 21 insertions(+), 1 deletion(-) diff --git a/.Rbuildignore b/.Rbuildignore index 4da9030..c510b70 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -3,3 +3,10 @@ ^data-raw$ ^LICENSE\.md$ ^README\.Rmd$ +^CITATION\.cff$ +^CLAUDE\.md$ +^_pkgdown\.yml$ +^docs$ +^\.github$ +^\.claude$ +^vignettes/articles$ diff --git a/DESCRIPTION b/DESCRIPTION index 426b902..fa75293 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -27,6 +27,7 @@ Suggests: knitr, rmarkdown, scales +VignetteBuilder: knitr Date: 2025-06-02 URL: https://github.com/openwashdata/artesianwells BugReports: https://github.com/openwashdata/artesianwells/issues diff --git a/NAMESPACE b/NAMESPACE index 6ae9268..a06b9ab 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -1,2 +1,6 @@ # Generated by roxygen2: do not edit by hand +importFrom(dplyr,"%>%") +importFrom(openxlsx,write.xlsx) +importFrom(readr,read_csv) +importFrom(readxl,read_excel) diff --git a/R/artesianwells.R b/R/artesianwells.R index ae0e311..1fa3585 100644 --- a/R/artesianwells.R +++ b/R/artesianwells.R @@ -47,4 +47,9 @@ #' #' # Summary of districts #' table(artesianwells$district) +#' +#' @importFrom dplyr %>% +#' @importFrom readr read_csv +#' @importFrom readxl read_excel +#' @importFrom openxlsx write.xlsx "artesianwells" diff --git a/man/artesianwells.Rd b/man/artesianwells.Rd index 10d589f..42aea1b 100644 --- a/man/artesianwells.Rd +++ b/man/artesianwells.Rd @@ -56,5 +56,6 @@ dim(artesianwells) # Summary of districts table(artesianwells$district) + } \keyword{datasets} diff --git a/vignettes/.gitignore b/vignettes/.gitignore index 180e991..e0e8cd0 100644 --- a/vignettes/.gitignore +++ b/vignettes/.gitignore @@ -1,3 +1,5 @@ *.html *.R -*_files/ \ No newline at end of file +*_files/ +articles/*.html +articles/*_files/ \ No newline at end of file From c9d1ad01a42622509934d9f970b21fc5d7cb4992 Mon Sep 17 00:00:00 2001 From: larnsce Date: Sun, 6 Jul 2025 21:27:17 +0200 Subject: [PATCH 6/8] Fix pkgdown.yml article reference - Change article reference from 'image-gallery' to 'articles/image-gallery' - Fixes pkgdown build error with hyphenated article names --- _pkgdown.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/_pkgdown.yml b/_pkgdown.yml index 59f2d41..c3a92e5 100644 --- a/_pkgdown.yml +++ b/_pkgdown.yml @@ -45,4 +45,4 @@ articles: - title: "Gallery" navbar: ~ contents: - - image-gallery + - articles/image-gallery From 2ed7bead231c5576ecfa839522346ff77f35cf99 Mon Sep 17 00:00:00 2001 From: larnsce Date: Sun, 6 Jul 2025 21:29:23 +0200 Subject: [PATCH 7/8] Highlight image gallery in At a Glance section - Add prominent link to image gallery after district summary table - Use camera emoji to draw attention - Emphasize interactive features and 43 documented sites --- README.Rmd | 2 ++ README.md | 9 +++++++-- 2 files changed, 9 insertions(+), 2 deletions(-) diff --git a/README.Rmd b/README.Rmd index 53e08f8..61d0934 100644 --- a/README.Rmd +++ b/README.Rmd @@ -92,6 +92,8 @@ artesianwells |> gt::as_raw_html() ``` +📸 **[View the Image Gallery](https://openwashdata.github.io/artesianwells/articles/image-gallery.html)** - Explore photographs from all 43 documented well sites with interactive tables and visualizations. + **Potential Use Cases** Water Resource Planning and Management Government bodies and NGOs can diff --git a/README.md b/README.md index 68ab85b..5f30f11 100644 --- a/README.md +++ b/README.md @@ -40,7 +40,7 @@ infrastructural conditions. ## At a Glance -
+
@@ -106,6 +106,11 @@ infrastructural conditions.
+📸 **[View the Image +Gallery](https://openwashdata.github.io/artesianwells/articles/image-gallery.html)** - +Explore photographs from all 43 documented well sites with interactive +tables and visualizations. + **Potential Use Cases** Water Resource Planning and Management Government bodies and NGOs can @@ -181,7 +186,7 @@ artesianwells |> gt::as_raw_html() ``` -
+
From 0bde1d6e44c14c93eb5dd882d0b9b2c3d68f032a Mon Sep 17 00:00:00 2001 From: larnsce Date: Sun, 6 Jul 2025 21:32:44 +0200 Subject: [PATCH 8/8] Add complete pkgdown site with image gallery - Add image gallery article to docs/articles/ - Update all pkgdown site pages with new navigation - Include gallery in navbar and article index - Update .gitignore for Quarto files --- docs/404.html | 2 +- docs/CLAUDE.html | 2 +- docs/LICENSE.html | 2 +- docs/articles/articles/image-gallery.html | 8 + docs/articles/image-gallery.html | 3157 +++++++++++++++++ .../figure-html/fig-usage-distribution-1.png | Bin 0 -> 57800 bytes .../libs/quarto-html/light-border.css | 1 + .../libs/quarto-html/popper.min.js | 6 + .../libs/quarto-html/tippy.css | 1 + .../libs/quarto-html/tippy.umd.min.js | 2 + docs/articles/index.html | 59 + docs/authors.html | 2 +- docs/index.html | 217 +- docs/news/index.html | 2 +- docs/pkgdown.yml | 5 +- docs/reference/artesianwells.html | 3 +- docs/reference/index.html | 2 +- docs/search.json | 2 +- docs/sitemap.xml | 2 + vignettes/.gitignore | 3 +- 20 files changed, 3465 insertions(+), 13 deletions(-) create mode 100644 docs/articles/articles/image-gallery.html create mode 100644 docs/articles/image-gallery.html create mode 100644 docs/articles/image-gallery_files/figure-html/fig-usage-distribution-1.png create mode 100644 docs/articles/image-gallery_files/libs/quarto-html/light-border.css create mode 100644 docs/articles/image-gallery_files/libs/quarto-html/popper.min.js create mode 100644 docs/articles/image-gallery_files/libs/quarto-html/tippy.css create mode 100644 docs/articles/image-gallery_files/libs/quarto-html/tippy.umd.min.js create mode 100644 docs/articles/index.html diff --git a/docs/404.html b/docs/404.html index 3dede47..ff6fc7c 100644 --- a/docs/404.html +++ b/docs/404.html @@ -31,7 +31,7 @@
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Artesian Wells Distribution
Wells with documented images
DistrictNumber of WellsAvg. Fill Time (seconds)
Machinga1062.9
Mangochi858.2
Blantyre5104.9
Chikwawa417.8
Ntchisi438.8
Karonga337.2
Neno30.0
Salima318.6
Balaka2153.7
Liwonde10.0
+
+
+
+ +
+ +

Wells by District +

+

Machinga +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Machinga +
+10 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Sitola + +-15.1098, 35.2455 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+ + +Sitola + +-15.1133, 35.2368 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+ + +Sitola + +-15.0803, 35.2369 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Sitola + +-15.0813, 35.239 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Sitola + +-15.078, 35.2403 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Sitola + +-15.0787, 35.2427 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Sitola + +-15.0622, 35.2344 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+ + +Stola + +-15.1141, 35.2379 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Stola + +-15.1141, 35.2379 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +Stola + +-15.1026, 35.2337 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+
+

Mangochi +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Mangochi +
+8 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Chimwala + +-14.7534, 35.1993 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+ + +Chimwala + +-14.7533, 35.1993 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+ + +Chimwala + +-14.7234, 35.1723 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+ + +Chimwala + +-14.7523, 35.202 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +Chimwala + +-14.4832, 35.2643 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+ + +Chimwala + +-14.7341, 35.189 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+ + +Chimwala + +-14.7358, 35.1906 + +Yes + +Fast (< 30s) + +Domestic + +No +
+ + +TA Chimwala + +-14.7526, 35.2042 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+
+

Blantyre +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Blantyre +
+5 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Machinjiri + +-15.7578, 35.0025 + +No + +Fast (< 30s) + +Other + +NA +
+ + +TA Chigalu + +-15.3765, 34.9852 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+ + +TA Kapeni + +-15.6469, 35.0212 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+ + +TA Lundu + +-15.4958, 35.1109 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+ + +TA Somba + +-15.9172, 34.9365 + +Yes + +Moderate (30-60s) + +Domestic + +No +
+
+

Chikwawa +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Chikwawa +
+4 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Mankhuwila + +-16.2437, 35.0101 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+ + +Mgabu + +-16.3001, 34.8412 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +Mgabu + +-15.8398, 34.3957 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +TA Maseya + +-16.0369, 34.9116 + +Yes + +Fast (< 30s) + +Domestic + +NA +
+
+

Ntchisi +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Ntchisi +
+4 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Chikho + +-13.4189, 34.058 + +NA + +Fast (< 30s) + +Domestic + +NA +
+ + +Kasakula + +-13.3739, 34.0964 + +Yes + +Fast (< 30s) + +Irrigation + +No +
+ + +Kasakula + +-13.3793, 34.0665 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+ + +Malenga + +-13.3333, 33.8693 + +Yes + +Slow (> 60s) + +Domestic + +Yes +
+
+

Karonga +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Karonga +
+3 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Kyungu + +-10.1265, 34.0035 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +Kyungu + +-9.9465, 33.8672 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+ + +Mwilangombe + +-10.3061, 34.1245 + +Yes + +Moderate (30-60s) + +Domestic + +NA +
+
+

Neno +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Neno +
+3 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Simon + +-15.2908, 34.9987 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +Simoni + +-15.3235, 34.978 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+ + +Symon + +-15.2908, 34.9986 + +Yes + +Fast (< 30s) + +Domestic + +No +
+
+

Salima +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Salima +
+3 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Khombedza + +-13.6473, 34.1564 + +Yes + +Moderate (30-60s) + +Domestic + +Yes +
+ + +Maganga + +-13.7322, 34.5687 + +Yes + +Fast (< 30s) + +Irrigation + +No +
+ + +Maganga + +-13.733, 34.5687 + +Yes + +Fast (< 30s) + +Irrigation + +No +
+
+

Balaka +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Balaka +
+2 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +TA Nkaya + +-15.2984, 35.0069 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+ + +TA Nkaya + +-15.2886, 35.0102 + +Yes + +Slow (> 60s) + +Domestic + +NA +
+
+

Liwonde +

+
+ +++++++++ + + + + + + + + + + + + + + + + + + + + + + + + + + +
+Artesian Wells in Liwonde +
+1 well sites documented +
+Well Image + +Traditional Authority + +Coordinates + +Structure + +Fill Rate + +Primary Use + +Operator +
+ + +Sitola + +-15.1105, 35.2576 + +Yes + +Fast (< 30s) + +Domestic + +Yes +
+
+

Image Grid View +

+

For a quick visual overview, here’s a grid displaying all well images organized in rows of 4:

+
+ +
+
+
+Balaka - TA Nkaya
+Balaka - TA Nkaya +
+
+
+Balaka - TA Nkaya
+Balaka - TA Nkaya +
+
+
+Blantyre - TA Chigalu
+Blantyre - TA Chigalu +
+
+
+Blantyre - TA Lundu
+Blantyre - TA Lundu +
+
+
+Blantyre - TA Kapeni
+Blantyre - TA Kapeni +
+
+
+Blantyre - TA Somba
+Blantyre - TA Somba +
+
+
+Liwonde - Sitola
+Liwonde - Sitola +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Chikwawa - TA Maseya
+Chikwawa - TA Maseya +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Machinga - Stola
+Machinga - Stola +
+
+
+Machinga - Stola
+Machinga - Stola +
+
+
+Machinga - Stola
+Machinga - Stola +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Chikwawa - Mankhuwila
+Chikwawa - Mankhuwila +
+
+
+Machinga - Sitola
+Machinga - Sitola +
+
+
+Karonga - Kyungu
+Karonga - Kyungu +
+
+
+Karonga - Mwilangombe
+Karonga - Mwilangombe +
+
+
+Ntchisi - Malenga
+Ntchisi - Malenga +
+
+
+Ntchisi - Chikho
+Ntchisi - Chikho +
+
+
+Ntchisi - Kasakula
+Ntchisi - Kasakula +
+
+
+Ntchisi - Kasakula
+Ntchisi - Kasakula +
+
+
+Salima - Maganga
+Salima - Maganga +
+
+
+Salima - Maganga
+Salima - Maganga +
+
+
+Salima - Khombedza
+Salima - Khombedza +
+
+
+Blantyre - Machinjiri
+Blantyre - Machinjiri +
+
+
+Karonga - Kyungu
+Karonga - Kyungu +
+
+
+Chikwawa - Mgabu
+Chikwawa - Mgabu +
+
+
+Chikwawa - Mgabu
+Chikwawa - Mgabu +
+
+
+Mangochi - Chimwala
+Mangochi - Chimwala +
+
+
+Mangochi - Chimwala
+Mangochi - Chimwala +
+
+
+Mangochi - Chimwala
+Mangochi - Chimwala +
+
+
+Mangochi - TA Chimwala
+Mangochi - TA Chimwala +
+
+
+Mangochi - Chimwala
+Mangochi - Chimwala +
+
+
+Mangochi - Chimwala
+Mangochi - Chimwala +
+
+
+Neno - Symon
+Neno - Symon +
+
+
+Neno - Simon
+Neno - Simon +
+
+
+

Usage Patterns +

+
+
Show code
+wells_with_images %>%
+  count(use_of_site) %>%
+  mutate(use_of_site = fct_reorder(use_of_site, n)) %>%
+  ggplot(aes(x = n, y = use_of_site, fill = use_of_site)) +
+  geom_col() +
+  geom_text(aes(label = n), hjust = -0.2) +
+  scale_x_continuous(expand = expansion(mult = c(0, 0.1))) +
+  labs(
+    x = "Number of Wells",
+    y = "Primary Use",
+    title = "Primary Usage of Artesian Wells"
+  ) +
+  theme_minimal() +
+  theme(legend.position = "none")
+
+
+
+ +
+
+Figure 1: Distribution of artesian wells by primary use +
+
+
+
+

Flow Rate Analysis +

+
+
Show code
+wells_with_images %>%
+  filter(!is.na(seconds_to_fill_20L)) %>%
+  group_by(district) %>%
+  summarise(
+    n_tested = n(),
+    min_time = min(seconds_to_fill_20L, na.rm = TRUE),
+    avg_time = mean(seconds_to_fill_20L, na.rm = TRUE),
+    max_time = max(seconds_to_fill_20L, na.rm = TRUE),
+    .groups = "drop"
+  ) %>%
+  gt() %>%
+  cols_label(
+    district = "District",
+    n_tested = "Wells Tested",
+    min_time = "Min (s)",
+    avg_time = "Average (s)",
+    max_time = "Max (s)"
+  ) %>%
+  fmt_number(
+    columns = c(min_time, avg_time, max_time),
+    decimals = 1
+  ) %>%
+  tab_header(
+    title = "Flow Rate Statistics",
+    subtitle = "Time to fill 20-liter container"
+  ) %>%
+  data_color(
+    columns = avg_time,
+    colors = scales::col_numeric(
+      palette = c("green", "yellow", "red"),
+      domain = NULL
+    )
+  )
+
+
+Table 2: Flow rate statistics by district +
+
+
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Flow Rate Statistics
Time to fill 20-liter container
DistrictWells TestedMin (s)Average (s)Max (s)
Balaka264.1153.7243.3
Blantyre50.0104.9361.4
Chikwawa40.017.841.4
Karonga324.637.246.7
Liwonde10.00.00.0
Machinga100.062.9221.3
Mangochi80.058.2140.5
Neno30.00.00.0
Ntchisi40.038.896.5
Salima30.018.637.5
+
+
+
+
+
+
+

Data Notes +

+
    +
  • Images are hosted on the mwater API and may require internet connection to display
    • +
  • Some wells have multiple images; only the first image is displayed in this gallery
    • +
  • Flow rate data is not available for all wells
    • +
  • The dataset was collected in April 2024
    • +
+ + + +
+

Crafted by Emmanuel Mhango.

+
+ +
+

Site built with pkgdown 2.1.3.

+
+ +
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index 0000000..abcd9f9 --- /dev/null +++ b/docs/articles/index.html @@ -0,0 +1,59 @@ + +Articles • artesianwells + Skip to contents + + +
+
+
+ +

Articles

+
+ +
+

Gallery

+
+ +
Artesian Wells Image Gallery
+
+
+
+ + +
+

Crafted by Emmanuel Mhango.

+
+ +
+

Site built with pkgdown 2.1.3.

+
+ +
+ + + + + + + diff --git a/docs/authors.html b/docs/authors.html index fb1b662..8464ddc 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -16,7 +16,7 @@