scplotkit/pyproject.toml at main · philinscience/scplotkit · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "scplotkit"
version = "0.1.2"
description = "Publication-ready plotting toolkit for single-cell atlas analysis with scanpy"
readme = "README.md"
license = { text = "MIT" }
requires-python = ">=3.10"
authors = [{ name = "scplotkit contributors" }]
keywords = [
    "single-cell",
    "scanpy",
    "anndata",
    "visualization",
    "bioinformatics",
]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Topic :: Scientific/Engineering :: Visualization",
]
dependencies = [
    "numpy>=1.24",
    "pandas>=1.5",
    "scipy>=1.10",
    "matplotlib>=3.7",
    "seaborn>=0.12",
    "scanpy>=1.9",
    "anndata>=0.9",
    "pyyaml>=6.0",
]

[project.optional-dependencies]
sankey = ["plotly>=5.15", "kaleido>=0.2"]
docs = [
    "sphinx>=7.0",
    "myst-nb>=1.0",
    "sphinx-book-theme>=1.1",
    "sphinx-autodoc-typehints>=1.24",
]
dev = ["pytest>=7.4", "pytest-cov>=4.1", "ruff>=0.4", "scplotkit[sankey]"]

[project.urls]
Homepage = "https://github.com/philinscience/scplotkit"
Documentation = "https://scplotkit.readthedocs.io"
Repository = "https://github.com/philinscience/scplotkit"
Issues = "https://github.com/philinscience/scplotkit/issues"

[tool.hatch.build.targets.wheel]
packages = ["src/scplotkit"]

[tool.pytest.ini_options]
testpaths = ["tests"]
addopts = "-ra"

[tool.ruff]
line-length = 120
target-version = "py310"
extend-exclude = ["*.ipynb"]

[tool.ruff.lint]
select = ["E", "F", "W", "I", "UP"]