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Tool version updates#13

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automated/tool-version-updates-2026.07
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Tool version updates#13
github-actions[bot] wants to merge 1 commit into
actions-update-versionsfrom
automated/tool-version-updates-2026.07

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@github-actions github-actions Bot commented Jul 2, 2026

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Tool version updates found

Tool Variable Old New Source
Singularity singularity_version 4.4.1 4.5.0 https://github.com/sylabs/singularity/releases/tag/v4.5.0
Go go_version 1.26.1 1.26.4 https://go.dev/dl/
Nextflow nextflow_version 25.10.4 26.04.4 https://github.com/nextflow-io/nextflow/releases/tag/v26.04.4
nf-core nfcore_version 3.5.2 4.0.2 https://pypi.org/project/nf-core/
RStudio rstudio_version_full 2023.12.1-402 2026.06.0-242 https://www.rstudio.com/wp-content/downloads.json
RStudio rstudio_version 2023.12.1 2026.06.0 https://www.rstudio.com/wp-content/downloads.json
Jupyter (timestamp) jupyter_version 2026.04 2026.07 (timestamp - not an upstream version)

Tools intentionally not auto-checked

  • java_version - major LTS selector, not an auto-bump target.

Image version bumped: 1.0.0 -> 1.1.0

@github-actions github-actions Bot force-pushed the automated/tool-version-updates-2026.07 branch 2 times, most recently from d3301b9 to 9ada1c6 Compare July 3, 2026 02:22
@github-actions github-actions Bot force-pushed the automated/tool-version-updates-2026.07 branch from 9ada1c6 to 5dd3837 Compare July 3, 2026 02:29
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