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[codex] Improve preprocessing layout #7

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Merged
Andrianarivelo merged 7 commits into from
Jun 10, 2026
Merged

[codex] Improve preprocessing layout #7

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a083d46
Improve-preprocessing-layout
Andrianarivelo May 29, 2026
8760b0c
Refine-artifact-controls
Andrianarivelo May 29, 2026
ca48b7e
Add-continuous-PSTH-alignment
Andrianarivelo May 29, 2026
18d7fb2
Improve sync and modeling tools
Andrianarivelo Jun 1, 2026
41b0aa8
Fix barcode sync event matching
Andrianarivelo Jun 1, 2026
cc4461f
Add barcode packet sync matching
Andrianarivelo Jun 1, 2026
5b04d2b
Move sync after behavior in postprocessing rail
Andrianarivelo Jun 1, 2026
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2,201 changes: 2,098 additions & 103 deletions pyBer/gui_postprocessing.py
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250 changes: 204 additions & 46 deletions pyBer/gui_preprocessing.py
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331 changes: 235 additions & 96 deletions pyBer/main.py
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6 changes: 2 additions & 4 deletions pyBer/onboarding.py
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Original file line number Diff line number Diff line change
Expand Up @@ -602,8 +602,7 @@ def _before(_w: QtWidgets.QWidget) -> None:
]

for key, title, body in [
("artifacts_list", "Artifact list", "Inspect detected and manual artifact windows, jump to them, and remove entries."),
("artifacts", "Artifact setup", "Choose artifact thresholds and how artifacts are handled: interpolate, cut, low-pass locally, or leave unchanged."),
("artifacts", "Artifacts", "Choose artifact thresholds, set artifact handling, and inspect detected or manual artifact windows."),
("filtering", "Filtering", "Set low-pass and smoothing options for signal and reference traces."),
("baseline", "Baseline", "Configure baseline estimation before computing dF/F, dF, or z-score outputs."),
("output", "Output", "Choose the processed trace formula and preview the resulting channel."),
Expand Down Expand Up @@ -960,8 +959,7 @@ def _keyboard_cheatsheet_html() -> str:
}

_PRE_SECTION_META: Dict[str, Tuple[str, str, str, str]] = {
"artifacts_list": ("L", "#f5c542", "Artifact list", "Inspect and edit detected / manual artifacts"),
"artifacts": ("A", "#ee6471", "Artifact setup", "Detection thresholds and manual selection"),
"artifacts": ("A", "#ee6471", "Artifacts", "Detection thresholds and detected / manual artifact list"),
"filtering": ("F", "#7d4df2", "Filtering", "Low-pass + smoothing for the photometry trace"),
"baseline": ("B", "#4b9df8", "Baseline", "Baseline estimation across the recording"),
"output": ("O", "#5dd39e", "Output", "Choose dFF / dF / z-score formula"),
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45 changes: 45 additions & 0 deletions pyBer/styles.py
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Expand Up @@ -948,6 +948,39 @@ def _paint_temporal(p, r, c):
border-radius: 12px;
}

QFrame#SidePanel, QFrame#syncPanel {
background: #1f242e;
border: 1px solid #343c4d;
border-radius: 8px;
}

QFrame#SidePanel QListWidget {
background: #202631;
border: 1px solid #3a4050;
border-radius: 8px;
padding: 4px;
}

QFrame#SidePanel QListWidget::item {
padding: 8px;
border-radius: 6px;
margin: 2px 0;
}

QFrame#SidePanel QListWidget::item:selected {
background: #4a3678;
color: #ffffff;
}

QLabel#BadgeLabel {
background: #243342;
border: 1px solid #3d5669;
border-radius: 10px;
color: #9ee6f4;
padding: 4px 8px;
font-weight: 700;
}

QToolButton#toolbarIconButton {
background: #1f242e;
border: 1px solid #343c4d;
Expand Down Expand Up @@ -1421,6 +1454,18 @@ def _build_light_qss(dark_qss: str) -> str:
/* Drawer panels */
QFrame#drawerPanel, QFrame#centerPanel { background: #ffffff; border: 1px solid #d6dde9; }
QFrame#transportBar { background: #eef1f7; border: 1px solid #d6dde9; }
QFrame#SidePanel, QFrame#syncPanel { background: #ffffff; border: 1px solid #d6dde9; border-radius: 8px; }
QFrame#SidePanel QListWidget { background: #f7f9fc; border: 1px solid #d6dde9; border-radius: 8px; padding: 4px; }
QFrame#SidePanel QListWidget::item { padding: 8px; border-radius: 6px; margin: 2px 0; }
QFrame#SidePanel QListWidget::item:selected { background: #2563eb; color: #ffffff; }
QLabel#BadgeLabel {
background: #dbeafe;
border: 1px solid #93c5fd;
border-radius: 10px;
color: #172033;
padding: 4px 8px;
font-weight: 700;
}
QToolButton#toolbarIconButton {
background: #ffffff;
border: 1px solid #c2ccda;
Expand Down
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