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Is there any way to get the connectivity information when using cuttlefish 2?

Status: Open.

#59 In COMBINE-lab/cuttlefish;

· ctb opened on Oct 26, 2025

Cuttlefish as a genome assembler?

Status: Open.

#57 In COMBINE-lab/cuttlefish;

· artorias111 opened on Apr 9, 2025

Make install cuttlefish3

Status: Open.

#56 In COMBINE-lab/cuttlefish;

· karlisdaga opened on Mar 25, 2025

CF3 outputs almost nothing when run on 2505 human genomes

Status: Open.

#53 In COMBINE-lab/cuttlefish;

· sebschmi opened on Mar 4, 2025

Cuttlefish3 segfaults randomly on a standard E.coli pangenome

Status: Open.

#52 In COMBINE-lab/cuttlefish;

· sebschmi opened on Feb 24, 2025

Segfault when running on AllTheBacteria dataset

Status: Open.

#48 In COMBINE-lab/cuttlefish;

· sebschmi opened on Jan 13, 2025

Cuttlefish 2 complains that the file kmc_01999_100_100.bin cannot be opened

Status: Open.

#47 In COMBINE-lab/cuttlefish;

· sebschmi opened on Jan 3, 2025

Obtaining unitig coordinates

questionFurther information is requestedFurther information is requested

Status: Open.

#46 In COMBINE-lab/cuttlefish;

· revinici opened on Nov 20, 2024

KMC compilation error when compiling from source

Status: Open.

#45 In COMBINE-lab/cuttlefish;

· Sawwave opened on Oct 2, 2024

Using $TMPDIR as default temp working folder?

enhancementNew feature or requestNew feature or request

Status: Open.

#41 In COMBINE-lab/cuttlefish;

· tseemann opened on Jun 24, 2024

arm64 Cuttlefish on bioconda

Status: Open.

#38 In COMBINE-lab/cuttlefish;

· aryakaul opened on Dec 5, 2023

Reduced GFA output --> GFA1/GFA2 Output

feature request

Status: Open.

#37 In COMBINE-lab/cuttlefish;

· aryakaul opened on Nov 2, 2023