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HaplotypeCaller on single-end data

Status: Open.

#75 In ExaScience/elprep;

· SimonaSecomandi opened on Feb 4, 2025

invalid BGZF file: does not end in proper EOF marker

Status: Open.

#74 In ExaScience/elprep;

· lucy-1n-the-ai opened on Jul 27, 2024

elprpe vcf-to-elsites dbSNP_156.vcf dbSNP_156.elsites [Killed]

Status: Open.

#73 In ExaScience/elprep;

· QifengSun opened on Oct 18, 2023

NO_COOR error when trying to index the output bam file

Status: Open.

#71 In ExaScience/elprep;

· ghost opened on Apr 4, 2023

build fails on ALMA linux 9

Status: Open.

#70 In ExaScience/elprep;

· ntm opened on Mar 21, 2023

Option to output realigned BAM file during --haplotypecaller step

Status: Open.

#69 In ExaScience/elprep;

· leonorpalmeira opened on Mar 16, 2023

elfasta-conversion error: bufio.Scanner: token too long

Status: Open.

#68 In ExaScience/elprep;

· desmodus1984 opened on Feb 28, 2023

Very low number of variants called by elprep in an heterozygous genome

Status: Open.

#67 In ExaScience/elprep;

· chklopp opened on Feb 14, 2023

feature: index output

Status: Open.

#66 In ExaScience/elprep;

· matthdsm opened on Dec 22, 2022

elprep merge: add input for intermediate files

Status: Open.

#65 In ExaScience/elprep;

· matthdsm opened on May 9, 2022

header tag differs between runs

Status: Open.

#64 In ExaScience/elprep;

· matthdsm opened on Apr 13, 2022

Add wiki page about "creating your own sfm script"

Status: Open.

#63 In ExaScience/elprep;

· matthdsm opened on Apr 13, 2022