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Prioritize cREs for CRISPRi validation
grnGene regulatory networksGene regulatory networksmultiome10X Multiome analysis10X Multiome analysisStatus: Open.#16 In IGVF-UCSD/.github;Repeat and expand variant effect predictions
multiome10X Multiome analysis10X Multiome analysiss2fSequence-to-function modelingSequence-to-function modelingsnm3csnm3C-seq analysissnm3C-seq analysisStatus: Open.#15 In IGVF-UCSD/.github;Retrain CpGNet methylation models on new pseudobulk data
s2fSequence-to-function modelingSequence-to-function modelingsnm3csnm3C-seq analysissnm3C-seq analysisStatus: Open.#14 In IGVF-UCSD/.github;Rebuild base-GRNs for SC-beta cell types
grnGene regulatory networksGene regulatory networksStatus: Open.#13 In IGVF-UCSD/.github;Integrative analysis: snm3C-seq × Dominguez2020 bulk methylation
integrationCross-dataset integrative analysisCross-dataset integrative analysissnm3csnm3C-seq analysissnm3C-seq analysisStatus: Open.#12 In IGVF-UCSD/.github;Reprocess snm3C-seq with new samples
snm3csnm3C-seq analysissnm3C-seq analysisStatus: Open.#11 In IGVF-UCSD/.github;Integrative analysis: igvf SC-islet Multiome × primary islet Multiome
integrationCross-dataset integrative analysisCross-dataset integrative analysismultiome10X Multiome analysis10X Multiome analysisStatus: Open.#10 In IGVF-UCSD/.github;Integrative analysis: igvf Multiome × Augsornworawat2023 Multiome
integrationCross-dataset integrative analysisCross-dataset integrative analysismultiome10X Multiome analysis10X Multiome analysisStatus: Open.#9 In IGVF-UCSD/.github;Begin v3 with IGVF uniform pipeline processed data
infrastructureData upload, pipeline, toolingData upload, pipeline, toolingmultiome10X Multiome analysis10X Multiome analysisStatus: Open.#8 In IGVF-UCSD/.github;Identify gene modules correlated with INS secretion score and/or disease
grnGene regulatory networksGene regulatory networksmultiome10X Multiome analysis10X Multiome analysisStatus: Open.#7 In IGVF-UCSD/.github;Upload v2 data to GCP
infrastructureData upload, pipeline, toolingData upload, pipeline, toolingmultiome10X Multiome analysis10X Multiome analysisStatus: Open.#6 In IGVF-UCSD/.github;Finalize peak calling
multiome10X Multiome analysis10X Multiome analysisStatus: Open.#5 In IGVF-UCSD/.github;