SPLAT JSON Schema + camelCase docs/examples + CI validation

Makefile

@@ -1,4 +1,4 @@
-.PHONY: build test lint tidy vuln check install clean help validate-schemas corpus dryrun-k8s dryrun-slurm
+.PHONY: build test lint tidy vuln check install clean help validate-schemas schema corpus dryrun-k8s dryrun-slurm
 
 BINARY     := bammm
 CMD        := ./cmd/bammm
@@ -39,6 +39,10 @@ vuln:
 validate-schemas:
 	./scripts/validate-schemas.sh
 
+## schema: regenerate schema/splat.schema.json from the Go types
+schema:
+	go test ./internal/splat/schema -update
+
 ## corpus: scrape a scheduler corpus from GitHub (usage: make corpus SCHED=slurm; SCHED=pairs hunts cross-scheduler pairs)
 corpus:
 	uv run scripts/corpus/fetch_corpus.py $(SCHED)

README.md

@@ -188,6 +188,7 @@ make test              # go test -race ./...
 make lint              # golangci-lint
 make check             # lint + test
 make validate-schemas  # kubeconform Tier 2 schema validation
+make schema            # regenerate schema/splat.schema.json from the Go types
 make dryrun-k8s        # Tier 3: kubectl --dry-run=server (needs a cluster + operators)
 make dryrun-slurm      # Tier 3: sbatch --test-only (needs slurmctld)
 ```

examples/array-job.yaml

@@ -11,14 +11,14 @@ spec:
     walltime: PT30M
   resources:
     tasks: 1
-    cpus_per_task: 1
-    memory_per_task: "512Mi"
+    cpusPerTask: 1
+    memoryPerTask: "512Mi"
     limits:
-      cpus_per_task: 1
-      memory_per_task: "1Gi"
+      cpusPerTask: 1
+      memoryPerTask: "1Gi"
   array:
     indices: "0-4"           # 5 elements (0,1,2,3,4)
-    max_concurrent: 2        # at most 2 running simultaneously
+    maxConcurrent: 2        # at most 2 running simultaneously
   execution:
     container:
       image: busybox:latest

examples/aws-batch-job.yaml

@@ -19,10 +19,10 @@ spec:
     walltime: PT1H
   resources:
     tasks: 1
-    cpus_per_task: 2
-    memory_per_task: "4Gi"
+    cpusPerTask: 2
+    memoryPerTask: "4Gi"
   lifecycle:
-    max_retries: 3
+    maxRetries: 3
   execution:
     container:
       image: "amazon/amazon-ecs-sample:latest"

examples/container-hpc-bridge.yaml

@@ -23,9 +23,9 @@ spec:
   resources:
     nodes: 1
     tasks: 1
-    cpus_per_task: 16
-    memory_per_task: "64Gi"
-    disk_per_task: "500Gi"
+    cpusPerTask: 16
+    memoryPerTask: "64Gi"
+    diskPerTask: "500Gi"
   execution:
     # K8s schedulers will use this:
     container:
@@ -55,14 +55,14 @@ spec:
           --output "${SAMPLE_ID}.vcf.gz"
       fi
 
-    working_dir: /scratch/genomics
+    workingDir: /scratch/genomics
     environment:
       vars:
         SAMPLE_ID: "NA12878"
         TMPDIR: /scratch/tmp
 
   placement:
-    node_selector:
+    nodeSelector:
       node-type: high-memory
     constraint: "avx2"
     exclusive: false
@@ -71,7 +71,7 @@ spec:
     stdout: "/scratch/logs/genomics-{job_id}.out"
     stderr: "/scratch/logs/genomics-{job_id}.err"
 
-  file_staging:
+  fileStaging:
     inputs:
       - src: "s3://my-genomics/samples/NA12878.bam"
         dst: "/scratch/genomics/NA12878.bam"
@@ -83,22 +83,22 @@ spec:
 
   volumes:
     - name: reference
-      mount_path: /data
-      read_only: true
+      mountPath: /data
+      readOnly: true
       nfs:
         server: nfs.genomics.internal
         path: /exports/reference/hg38
     - name: scratch
-      mount_path: /scratch
-      empty_dir: true
+      mountPath: /scratch
+      emptyDir: true
 
   notifications:
     email: "bioinformatician@example.com"
     events: [end, fail]
 
   lifecycle:
-    max_retries: 1
-    ttl_after_finished: PT4H
+    maxRetries: 1
+    ttlAfterFinished: PT4H
 
   extensions:
     slurm: