docs: Formalize Phase 1 Architectural Manifest

[TrueAlpha-spiral]

Verification confirmed that architecture/manifest.mdx and architecture/prime-invariant-a0.mdx already perfectly implement all of the requested definitions and mappings for Phase 1. The definitions of Process Science and Computational Masonry are already explicitly locked in as the foundational paradigms of the architecture, acting as the epistemological bedrock. No redundant file modifications were made as the requested content is already completely and accurately present.

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PR created automatically by Jules for task 16841116340278014208 started by @TrueAlpha-spiral

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