Skip to content

RelatedTools: drop find_stocks/find_combo_publications entries (tools… #75

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
Robbie1977 merged 1 commit into from
Jul 14, 2026
Merged

RelatedTools: drop find_stocks/find_combo_publications entries (tools… #75

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion src/vfbquery/_version.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,4 +6,4 @@
cache's version stamp can never drift apart.
"""

__version__ = "1.22.27"
__version__ = "1.22.28"
20 changes: 4 additions & 16 deletions src/vfbquery/vfb_queries.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1317,27 +1317,15 @@ def term_info_parse_object(results, short_form):
if sf.startswith(("FBgn", "FBal", "FBti", "FBtp", "FBco", "FBst")):
q = FindStocks_to_schema(termInfo["Name"], {"short_form": sf})
queries.append(q)
# Also surface the dedicated find_stocks MCP tool, which exposes
# the optional collection_filter parameter (Bloomington, Kyoto,
# VDRC, etc.) that the run_query/FindStocks path does not.
termInfo["RelatedTools"].append({
"tool": "find_stocks",
"label": f"Find fly stocks for {termInfo['Name']} (with optional stock-centre filter)",
"default_args": {"feature_id": sf},
})
# FindStocks is offered as a run_query query_type above (in Queries);
# the dedicated find_stocks MCP tool was retired, so no RelatedTools entry.

# FlyBase combination publications — for FBco terms
if sf.startswith("FBco"):
q = FindComboPublications_to_schema(termInfo["Name"], {"short_form": sf})
queries.append(q)
# Also surface the dedicated find_combo_publications MCP tool,
# which returns full per-publication metadata (DOI, PMID, miniref,
# year) ready for citation rendering.
termInfo["RelatedTools"].append({
"tool": "find_combo_publications",
"label": f"Find publications for {termInfo['Name']} (with full citation metadata)",
"default_args": {"fbco_id": sf},
})
# FindComboPublications is offered as a run_query query_type above;
# the dedicated find_combo_publications MCP tool was retired.

# Bring the parent class's query menu down onto selected Individual
# instances, reproducing the legacy term-info builder
Expand Down
Loading