Skip to content

Bump ruff from 0.15.22 to 0.16.0 - #244

Open
dependabot[bot] wants to merge 1 commit into
masterfrom
dependabot/uv/ruff-0.16.0
Open

Bump ruff from 0.15.22 to 0.16.0#244
dependabot[bot] wants to merge 1 commit into
masterfrom
dependabot/uv/ruff-0.16.0

Conversation

@dependabot

@dependabot dependabot Bot commented on behalf of github Jul 24, 2026

Copy link
Copy Markdown
Contributor

Bumps ruff from 0.15.22 to 0.16.0.

Release notes

Sourced from ruff's releases.

0.16.0

Release Notes

Released on 2026-07-23.

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

  • Ruff now enables a much larger set of rules by default (413, up from 59). See the blog post for more details and the new Default Rules page for a full listing of the enabled rules.

  • Ruff can now format Python code blocks in Markdown files and will do this by default. See the documentation for more details.

  • Ruff now supports ruff: ignore comments at the ends of lines, like noqa comments, or on the line preceding a diagnostic. For example, these both suppress an unused-import (F401) diagnostic:

    import math  # ruff: ignore[F401]
    ruff: ignore[F401]
    import os

  • Fixes are now shown in check and format --check output:

    ruff format --check .
    unformatted: File would be reformatted
     --> try.md:1:1
      |
    1 | ```python
      - import   math
    2 + import math
    3 | ```
      |
    1 file would be reformatted

    This example also shows off the Markdown formatting.

  • format --check now supports the same output formats as the linter, including the github and gitlab outputs for rendering annotations in CI:

    ruff format --check --output-format github .
    ::error title=ruff (unformatted),file=try.md,line=2,col=8,endLine=2,endColumn=10::try.md:2:8: unformatted: File would be reformatted

    See the CLI help or documentation for the full list of supported formats.

  • The filename, location, end_location, fix.edits[].location, and fix.edits[].end_location fields in the JSON output format may now be null rather than defaulting to the empty string and row 1, column 1, respectively.

... (truncated)

Changelog

Sourced from ruff's changelog.

0.16.0

Released on 2026-07-23.

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

  • Ruff now enables a much larger set of rules by default (413, up from 59). See the blog post for more details and the new Default Rules page for a full listing of the enabled rules.

  • Ruff can now format Python code blocks in Markdown files and will do this by default. See the documentation for more details.

  • Ruff now supports ruff: ignore comments at the ends of lines, like noqa comments, or on the line preceding a diagnostic. For example, these both suppress an unused-import (F401) diagnostic:

    import math  # ruff: ignore[F401]
    ruff: ignore[F401]
    import os

  • Fixes are now shown in check and format --check output:

    ruff format --check .
    unformatted: File would be reformatted
     --> try.md:1:1
      |
    1 | ```python
      - import   math
    2 + import math
    3 | ```
      |
    1 file would be reformatted

    This example also shows off the Markdown formatting.

  • format --check now supports the same output formats as the linter, including the github and gitlab outputs for rendering annotations in CI:

    ruff format --check --output-format github .
    ::error title=ruff (unformatted),file=try.md,line=2,col=8,endLine=2,endColumn=10::try.md:2:8: unformatted: File would be reformatted

... (truncated)

Commits
  • a2635fd Bump 0.16.0 (#27136)
  • 3433449 [ty] Reuse full call diagnostics for implicit setter calls (#27115)
  • 2240070 Reflect ruff: ignore and --add-ignore stabilization in documentation (#27...
  • 17ef711 Stabilize --add-ignore (#27125)
  • ef912bb Add newly stabilized rules to defaults (#27055)
  • b30f040 Stabilize new default rules (#27035)
  • bcd70c5 Exclude Markdown files from format-dev runs (#27052)
  • 87e51e2 Fix format --check spans for syntax errors (#27045)
  • afe2723 [flake8-gettext] Stabilize qualified-name and built-in binding resolution (...
  • a9702d8 [flake8-bandit] Stabilize string literal binding resolution (S310) (#26944)
  • Additional commits viewable in compare view

Dependabot compatibility score

Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.


Dependabot commands and options

You can trigger Dependabot actions by commenting on this PR:

  • @dependabot rebase will rebase this PR
  • @dependabot recreate will recreate this PR, overwriting any edits that have been made to it
  • @dependabot show <dependency name> ignore conditions will show all of the ignore conditions of the specified dependency
  • @dependabot ignore this major version will close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this minor version will close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)
  • @dependabot ignore this dependency will close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)

Bumps [ruff](https://github.com/astral-sh/ruff) from 0.15.22 to 0.16.0.
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.15.22...0.16.0)

---
updated-dependencies:
- dependency-name: ruff
  dependency-version: 0.16.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Jul 24, 2026
@codecov

codecov Bot commented Jul 24, 2026

Copy link
Copy Markdown

❌ 122 Tests Failed:

Tests completed Failed Passed Skipped
410 122 288 2
View the full list of 122 ❄️ flaky test(s)
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::any_outputSource_compatibility

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.257s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/any-type-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/any-type-compat.cwl
output:
  output1:
  - hello
  - world
  output2:
  - foo
  - bar
  output3: hello
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#any_outputSource_compatibility
doc: Testing Any type compatibility in outputSource
tags:
- required
- workflow
line: '195'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::booleanflags_cl_noinputbinding

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.207s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bool-empty-inputbinding-job.json
output:
  args: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bool-empty-inputbinding.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#booleanflags_cl_noinputbinding
doc: Test that boolean flags do not appear on command line if inputBinding is 
  empty and not null
tags:
- required
- command_line_tool
line: '1708'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_empty_array_input

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.106s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty-array-job.json
output:
  args: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty-array-input.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_empty_array_input
doc: Test that empty array input does not add anything to command line
tags:
- required
- command_line_tool
line: '1748'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::cl_gen_arrayofarrays

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.383s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nested-array-job.yml
output:
  echo:
    checksum: sha1$3f786850e387550fdab836ed7e6dc881de23001b
    location: echo.txt
    class: File
    size: 2
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nested-array.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#cl_gen_arrayofarrays
doc: Test command line generation of array-of-arrays
tags:
- required
- command_line_tool
line: '1242'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_any_input_with_integer_provided

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.42s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-int.json
output:
  t1: 7
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_any_input_with_integer_provided
doc: Test Any parameter with integer input to a tool
tags:
- command_line_tool
- inline_javascript
line: '2086'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_file_size_property_with_empty_file

Flake rate in main: 17.19% (Passed 106 times, Failed 22 times)

Stack Traces | 0.46s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/job-input-array-one-empty-file.json
output:
  output_file:
    checksum: sha1$dad5a8472b87f6c5ef87d8fc6ef1458defc57250
    basename: output.txt
    location: Any
    class: File
    size: 11
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/size-expression-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_file_size_property_with_empty_file
doc: Test use of size in expressions for an empty file
tags:
- command_line_tool
- inline_javascript
line: '2234'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_file_size_property_with_multi_file

Flake rate in main: 17.19% (Passed 106 times, Failed 22 times)

Stack Traces | 0.087s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/job-input-array-few-files.json
output:
  output_file:
    checksum: sha1$9def39730e8012bd09bf8387648982728501737d
    basename: output.txt
    location: Any
    class: File
    size: 31
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/size-expression-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_file_size_property_with_multi_file
doc: Test use of size in expressions for a few files
tags:
- command_line_tool
- inline_javascript
line: '2248'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_optional_union_input_file_or_files_with_array_of_one_file_provided

Flake rate in main: 19.53% (Passed 103 times, Failed 25 times)

Stack Traces | 0.122s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/job-input-array-one-empty-file.json
output:
  output_file:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    basename: output.txt
    location: Any
    class: File
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-or-files.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_optional_union_input_file_or_files_with_array_of_one_file_provided
doc: Test input union type or File or File array to a tool with one file in 
  array specified.
tags:
- command_line_tool
- inline_javascript
line: '2030'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_optional_union_input_file_or_files_with_many_files_provided

Flake rate in main: 19.53% (Passed 103 times, Failed 25 times)

Stack Traces | 0.236s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/job-input-array-few-files.json
output:
  output_file:
    checksum: sha1$6d1723861ad5a1260f1c3c07c93076c5a215f646
    basename: output.txt
    location: Any
    class: File
    size: 1114
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-or-files.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_optional_union_input_file_or_files_with_many_files_provided
doc: Test input union type or File or File array to a tool with a few files in 
  array specified.
tags:
- command_line_tool
- inline_javascript
line: '2044'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_optional_union_input_file_or_files_with_nothing_provided

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.129s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/job-input-null.json
output:
  output_file:
    checksum: sha1$503458abf7614be3fb26d85ff5d8f3e17aa0a552
    basename: output.txt
    location: Any
    class: File
    size: 10
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-or-files.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_optional_union_input_file_or_files_with_nothing_provided
doc: Test input union type or File or File array to a tool with null specified.
tags:
- command_line_tool
- inline_javascript
line: '2072'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::clt_optional_union_input_file_or_files_with_single_file_provided

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.129s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/job-input-one-file.json
output:
  output_file:
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    basename: output.txt
    location: Any
    class: File
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-or-files.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#clt_optional_union_input_file_or_files_with_single_file_provided
doc: Test input union type or File or File array to a tool with one file 
  specified.
tags:
- command_line_tool
- inline_javascript
line: '2058'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::default_path_notfound_warning

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.356s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output: {}
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/default_path_job.yml
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/default_path.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#default_path_notfound_warning
doc: Test warning instead of error when default path is not found
tags:
- required
- command_line_tool
line: '1411'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_input_docker

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.291s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_input_docker
doc: Test directory input in Docker
tags:
- required
- command_line_tool
line: '1114'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_input_param_ref

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.242s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_input_param_ref
doc: Test directory input with parameter reference
tags:
- required
- command_line_tool
line: '1101'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_output

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.31s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir3-job.yml
output:
  outdir:
    class: Directory
    listing:
    - class: File
      location: goodbye.txt
      checksum: sha1$dd0a4c4c49ba43004d6611771972b6cf969c1c01
      size: 24
    - class: File
      location: hello.txt
      checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir3.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_output
doc: Test directory output
tags:
- required
- command_line_tool
line: '1127'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::directory_secondaryfiles

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.17s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4-job.yml
output:
  outlist:
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    size: 20
    location: output.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#directory_secondaryfiles
doc: Test directories in secondaryFiles
tags:
- required
- command_line_tool
line: '1151'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dockeroutputdir

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.141s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  thing:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: thing
    class: File
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/docker-output-dir.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dockeroutputdir
doc: Test dockerOutputDirectory
tags:
- docker
- command_line_tool
line: '1386'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_initial_workdir

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.242s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    size: 20
    location: output.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir5.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_initial_workdir
doc: Test dynamic initial work dir
tags:
- initial_work_dir
- command_line_tool
line: '1165'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_resreq_filesizes

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.365s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-dir-job.yaml
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-dir.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_resreq_filesizes
doc: Test dynamic resource reqs referencing the size of Files inside a Directory
output:
  output:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- command_line_tool
line: '1779'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_resreq_inputs

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.068s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-job.yaml
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_resreq_inputs
doc: Test dynamic resource reqs referencing inputs
output:
  output:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- command_line_tool
line: '1635'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_resreq_wf

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.24s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-job.yaml
doc: Test simple workflow with a dynamic resource requirement
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-workflow.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_resreq_wf
output:
  cores:
    location: output
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
tags:
- resource
- workflow
line: '1735'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_resreq_wf_optional_file_default

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.17s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-workflow-tooldefault.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  cores:
    location: output
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_resreq_wf_optional_file_default
doc: Within a workflow, test accessing the size attribute of an optional input 
  File as part of a CommandLineTool's ResourceRequirement calculation. The 
  CommandLineTool input has a default value (a local file) and the workflow nor 
  the workflow step does not provide any value for this input.
tags:
- workflow
- resource
line: '2320'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_resreq_wf_optional_file_step_default

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.308s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-workflow-stepdefault.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  cores:
    location: output
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_resreq_wf_optional_file_step_default
doc: Within a workflow, test accessing the size attribute of an optional input 
  File as part of a CommandLineTool's ResourceRequirement calculation. The 
  workflow step provides a default value (a local file) for this input and the 
  workflow itself does not provide any value for this input.
tags:
- workflow
- resource
line: '2336'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::dynamic_resreq_wf_optional_file_wf_default

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.22s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dynresreq-workflow-inputdefault.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#dynamic_resreq_wf_optional_file_wf_default
output:
  cores:
    location: output
    size: 2
    class: File
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
doc: Within a workflow, test accessing the size attribute of an optional input 
  File as part of a CommandLineTool's ResourceRequirement calculation. The 
  workflow itelf provides a default value (a local file) for this input.
tags:
- workflow
- resource
line: '2352'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::embedded_subworkflow

Flake rate in main: 22.31% (Passed 101 times, Failed 29 times)

Stack Traces | 0.675s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines10-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#embedded_subworkflow
doc: Test embedded subworkflow
tags:
- subworkflow
- workflow
line: '1299'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::env_home_tmpdir

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.262s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output: {}
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/envvar.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#env_home_tmpdir
doc: Test $HOME and $TMPDIR are set correctly
tags:
- required
- command_line_tool
line: '1254'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::env_home_tmpdir_docker

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.273s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output: {}
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/envvar2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#env_home_tmpdir_docker
doc: Test $HOME and $TMPDIR are set correctly in Docker
tags:
- required
- command_line_tool
line: '1261'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::env_home_tmpdir_docker_no_return_code

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.121s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  results:
    basename: results
    class: File
    checksum: sha1$7d5ca8c0c03e883c56c4eb1ef6f6bb9bccad4d86
    size: 8
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/envvar3.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#env_home_tmpdir_docker_no_return_code
doc: Test $HOME and $TMPDIR are set correctly in Docker without using return 
  code
tags:
- required
- command_line_tool
line: '1811'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expr_reference_self_noinput

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.085s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  args: []
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stage-unprovided-file.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expr_reference_self_noinput
doc: Test that expression engine does not fail to evaluate reference to self 
  with unprovided input
tags:
- required
- command_line_tool
line: '1718'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 1.15s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
  output: 1
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any
doc: Test default usage of Any in expressions.
tags:
- inline_javascript
- expression_tool
line: '149'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any_null

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.355s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
  output: 1
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_null
doc: Test explicitly passing null to Any type inputs with default values.
tags:
- inline_javascript
- expression_tool
line: '157'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any_nullstring_nodefaultany

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.2s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-tool.cwl
output:
  output: 2
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_nullstring_nodefaultany
doc: Testing the string 'null' does not trip up an Any without a default value.
tags:
- inline_javascript
- expression_tool
line: '187'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_any_string

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.166s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression2-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-expression1-tool.cwl
output:
  output: 2
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_any_string
doc: Testing the string 'null' does not trip up an Any with a default value.
tags:
- inline_javascript
- expression_tool
line: '165'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_outputEval

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.144s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc2-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_outputEval
doc: Test outputEval to transform output
tags:
- inline_javascript
- command_line_tool
line: '224'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_parseint

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.146s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/parseInt-job.json
output:
  output: 42
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/parseInt-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_parseint
doc: Test ExpressionTool with Javascript engine
tags:
- inline_javascript
- expression_tool
line: '217'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expression_tool_int_array_output

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.473s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/output-arrays-int-job.json
output:
  o:
  - 0
  - 1
  - 2
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/output-arrays-int.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expression_tool_int_array_output
doc: Test output arrays in a tool (with ints).
tags:
- expression_tool
- inline_javascript
line: '2184'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::expressionlib_tool_wf_override

Flake rate in main: 22.31% (Passed 101 times, Failed 29 times)

Stack Traces | 1.12s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  out:
    checksum: sha1$7448d8798a4380162d4b56f9b452e2f6f9e24e7a
    location: whatever.txt
    class: File
    size: 2
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/js-expr-req-wf.cwl#wf
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#expressionlib_tool_wf_override
doc: Test that expressionLib requirement of individual tool step overrides 
  expressionLib of workflow.
tags:
- inline_javascript
- workflow
line: '1268'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::exprtool_directory_literal

Flake rate in main: 21.54% (Passed 102 times, Failed 28 times)

Stack Traces | 0.25s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir7.yml
output:
  dir:
    location: a_directory
    class: Directory
    listing:
    - class: File
      location: whale.txt
      checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
      size: 1111
    - class: File
      location: hello.txt
      checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
      size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir7.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#exprtool_directory_literal
doc: Test directory literal output created by ExpressionTool
tags:
- inline_javascript
- expression_tool
line: '1327'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::exprtool_file_literal

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.179s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  lit:
    location: a_file
    class: File
    checksum: sha1$fea23663b9c8ed71968f86415b5ec091bb111448
    size: 19
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal-ex.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#exprtool_file_literal
doc: Test file literal output created by ExpressionTool
tags:
- inline_javascript
- expression_tool
line: '1353'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::exprtool_literal_secondary_file

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.389s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  lit:
    location: a_file
    class: File
    checksum: sha1$a49c4cc1531107fe689606f89c9391db4f8efe15
    size: 21
    secondaryFiles:
    - class: File
      location: b_file
      checksum: sha1$5ff34169047fdff65569f0624c6395799e213826
      size: 21
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal-ex1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#exprtool_literal_secondary_file
doc: Test file literal with a secondary file output created by ExpressionTool
tags:
- inline_javascript
- expression_tool
line: '1365'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::fileliteral_input_docker

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.291s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal.yml
output:
  output_file:
    class: File
    checksum: sha1$d0e04ff6c413c7d57f9a0ca0a33cd3ab52e2dd9c
    location: output.txt
    size: 18
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-nodocker.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#fileliteral_input_docker
doc: Test file literal as input without Docker
tags:
- required
- command_line_tool
line: '1648'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::filesarray_secondaryfiles

Flake rate in main: 22.31% (Passed 101 times, Failed 29 times)

Stack Traces | 0.487s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/docker-array-secondaryfiles-job.json
output:
  bai_list:
    checksum: sha1$081fc0e57d6efa5f75eeb237aab1d04031132be6
    location: fai.list
    class: File
    size: 386
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/docker-array-secondaryfiles.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#filesarray_secondaryfiles
doc: Test required, optional and null secondaryFiles on array of files.
tags:
- docker
- inline_javascript
- command_line_tool
line: '1306'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::format_checking

Flake rate in main: 21.54% (Passed 102 times, Failed 28 times)

Stack Traces | 0.182s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest-job.json
output:
  output:
    location: output.txt
    format: http://edamontology.org/format_2330
    size: 1111
    class: File
    checksum: sha1$97fe1b50b4582cebc7d853796ebd62e3e163aa3f
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#format_checking
doc: Test simple format checking.
tags:
- required
- command_line_tool
line: '818'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::format_checking_subclass

Flake rate in main: 17.19% (Passed 106 times, Failed 22 times)

Stack Traces | 7.54s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest2-job.json
output:
  output:
    location: output.txt
    format: http://edamontology.org/format_1929
    size: 12010
    class: File
    checksum: sha1$971d88faeda85a796752ecf752b7e2e34f1337ce
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/formattest2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#format_checking_subclass
doc: Test format checking against ontology using subclassOf.
tags:
- required
- command_line_tool
line: '832'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::hints_import

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.064s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  out:
    class: File
    checksum: sha1$b3ec4ed1749c207e52b3a6d08c59f31d83bff519
    location: out
    size: 15
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/imported-hint.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#hints_import
doc: Test hints with $import
tags:
- required
- command_line_tool
line: '1399'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_empty_writable

Flake rate in main: 17.19% (Passed 106 times, Failed 22 times)

Stack Traces | 0.124s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  out:
    basename: emptyWritableDir
    listing:
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      basename: blurg
      location: blurg
      class: File
      size: 0
    location: emptyWritableDir
    class: Directory
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/writable-dir.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_empty_writable
doc: Test empty writable dir with InitialWorkDirRequirement
tags:
- inline_javascript
- initial_work_dir
- command_line_tool
line: '1593'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_empty_writable_docker

Flake rate in main: 17.19% (Passed 106 times, Failed 22 times)

Stack Traces | 0.368s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  out:
    basename: emptyWritableDir
    listing:
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      basename: blurg
      location: blurg
      class: File
      size: 0
    location: emptyWritableDir
    class: Directory
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/writable-dir-docker.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_empty_writable_docker
doc: Test empty writable dir with InitialWorkDirRequirement inside Docker
tags:
- inline_javascript
- initial_work_dir
- command_line_tool
line: '1614'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_expr

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.361s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/arguments-job.yml
output:
  classfile:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: Hello.class
    class: File
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/linkfile.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_expr
doc: Test expression in InitialWorkDir listing
tags:
- initial_work_dir
- command_line_tool
line: '1205'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initial_workdir_output

Flake rate in main: 22.31% (Passed 101 times, Failed 29 times)

Stack Traces | 0.176s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/initialworkdirrequirement-docker-out-job.json
output:
  OUTPUT:
    checksum: sha1$aeb3d11bdf536511649129f4077d5cda6a324118
    location: ref.fasta
    secondaryFiles:
    - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      location: ref.fasta.fai
      class: File
      size: 0
    class: File
    size: 12010
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/initialworkdirrequirement-docker-out.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initial_workdir_output
doc: Test output of InitialWorkDir
tags:
- docker
- initial_work_dir
- command_line_tool
line: '1281'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initialworkdir_nesteddir

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.225s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: doc: Test InitialWorkDirRequirement with a nested directory structure from 
  another step
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  ya_empty:
    class: File
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: ya
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/iwdr_with_nested_dirs.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initialworkdir_nesteddir
tags:
- initial_work_dir
- workflow
line: '1696'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::initialworkpath_output

Flake rate in main: 18.46% (Passed 106 times, Failed 24 times)

Stack Traces | 0.354s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output: {}
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/initialwork-path.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#initialworkpath_output
doc: Test that file path in $(inputs) for initialworkdir is in $(outdir).
tags:
- initial_work_dir
- command_line_tool
line: '1528'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::inlinejs_req_expressions

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.183s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  args:
  - -A
  - '2'
  - -B
  - baz
  - -C
  - '10'
  - '9'
  - '8'
  - '7'
  - '6'
  - '5'
  - '4'
  - '3'
  - '2'
  - '1'
  - -D
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/inline-js.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#inlinejs_req_expressions
doc: Test InlineJavascriptRequirement with multiple expressions in the same tool
tags:
- inline_javascript
- command_line_tool
line: '1418'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::input_dir_inputbinding

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.439s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir-job.yml
output:
  outlist:
    size: 20
    location: output.txt
    checksum: sha1$13cda8661796ae241da3a18668fb552161a72592
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir6.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#input_dir_inputbinding
doc: Test directory input with inputBinding
tags:
- shell_command
- command_line_tool
line: '1229'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::input_dir_recurs_copy_writable

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.53s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/recursive-input-directory.yml
output:
  output_dir:
    basename: work_dir
    class: Directory
    listing:
    - basename: a
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: work_dir/a
      size: 0
    - basename: b
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: work_dir/b
      size: 0
    - basename: c
      class: Directory
      listing:
      - basename: d
        checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
        class: File
        location: work_dir/c/d
        size: 0
      location: work_dir/c
    - basename: e
      checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
      class: File
      location: work_dir/e
      size: 0
    location: work_dir
  test_result:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    class: File
    location: output.txt
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/recursive-input-directory.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#input_dir_recurs_copy_writable
doc: Test if a writable input directory is recursively copied and writable
tags:
- initial_work_dir
- command_line_tool
line: '1426'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::input_file_literal

Flake rate in main: 21.54% (Passed 102 times, Failed 28 times)

Stack Traces | 0.201s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/file-literal.yml
output:
  output_file:
    class: File
    checksum: sha1$d0e04ff6c413c7d57f9a0ca0a33cd3ab52e2dd9c
    location: output.txt
    size: 18
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#input_file_literal
doc: Test file literal as input
tags:
- required
- command_line_tool
line: '1193'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::job_input_secondary_subdirs

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.274s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4-subdir-1-job.yml
output:
  outlist:
    checksum: sha1$9d9bc8f5252d39274b5dfbac64216c6e888f5dfc
    size: 14
    location: output.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#job_input_secondary_subdirs
doc: Test specifying secondaryFiles in subdirectories of the job input document.
tags:
- required
- command_line_tool
line: '1867'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::job_input_subdir_primary_and_secondary_subdirs

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.128s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4-subdir-2-job.yml
output:
  outlist:
    checksum: sha1$9d9bc8f5252d39274b5dfbac64216c6e888f5dfc
    size: 14
    location: output.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/dir4.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#job_input_subdir_primary_and_secondary_subdirs
doc: Test specifying secondaryFiles in same subdirectory of the job input as the
  primary input file.
tags:
- required
- command_line_tool
line: '1881'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::metadata

Flake rate in main: 22.31% (Passed 101 times, Failed 29 times)

Stack Traces | 0.492s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output: {}
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/metadata.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#metadata
doc: Test metadata
tags:
- required
- command_line_tool
line: '811'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nameroot_nameext_generated

Flake rate in main: 18.46% (Passed 106 times, Failed 24 times)

Stack Traces | 1.07s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/basename-fields-job.yml
output:
  extFile:
    checksum: sha1$301a72c82a835e1737caf30f94d0eec210c4d9f1
    class: File
    size: 5
    location: Any
    path: Any
  rootFile:
    checksum: sha1$b4a583c391e234cf210e1d576f68f674c8ad7ecd
    class: File
    size: 10
    location: Any
    path: Any
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/basename-fields-test.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nameroot_nameext_generated
doc: Test that nameroot and nameext are generated from basename at execution 
  time by the runner
tags:
- step_input
- workflow
line: '1509'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nameroot_nameext_stdout_expr

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.145s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  b:
    checksum: sha1$c4cfd130e7578714e3eef91c1d6d90e0e0b9db3e
    location: whale.xtx
    class: File
    size: 21
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/nameroot.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nameroot_nameext_stdout_expr
doc: Test nameroot/nameext expression in arguments, stdout
tags:
- required
- command_line_tool
line: '1217'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::nested_workflow_noexp

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.172s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  wc_output:
    class: File
    checksum: sha1$3596ea087bfdaf52380eae441077572ed289d657
    size: 3
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#nested_workflow_noexp
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines8-wf-noET.cwl
doc: Test nested workflow, without ExpressionTool
tags:
- workflow
- subworkflow
line: '2298'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::null_missing_params

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.194s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  out: "t\n"
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-defined.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#null_missing_params
doc: Test that missing parameters are null (not undefined) in expression
tags:
- inline_javascript
- command_line_tool
line: '1481'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::optional_input_scatter

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.252s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/optional-input-scatter.cwl
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-job1.json
output:
  out:
  - foo one
  - foo two
  - foo three
  - foo four
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#optional_input_scatter
doc: "Test optional step input with single scatter parameter\n"
tags:
- scatter
- workflow
line: '1974'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::outputbinding_glob_sorted

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.186s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: doc: Test that OutputBinding.glob is sorted as specified by POSIX
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#outputbinding_glob_sorted
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/glob_test.cwl
output:
  letters:
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: a
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: b
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: c
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: w
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: x
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: y
    class: File
    size: 0
  - checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: z
    class: File
    size: 0
tags:
- required
- command_line_tool
line: '1660'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::packed_import_schema

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.345s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/import_schema-def_job.yml
output:
  output_bam:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    basename: a.bam
    class: File
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/import_schema-def_packed.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#packed_import_schema
doc: SchemaDefRequirement with $import, and packed
tags:
- schema_def
- workflow
line: '1855'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::param_evaluation_expr

Flake rate in main: 22.31% (Passed 101 times, Failed 29 times)

Stack Traces | 0.271s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  t1:
    bar:
      b az: 2
      b"az:
      b'az: 1
      baz: zab1
      buz:
      - a
      - b
      - c
  t10: 1
  t11: 1
  t12:
  t13: -zab1
  t14: -zab1
  t15: -zab1
  t16: -zab1
  t17: zab1 zab1
  t18: zab1 zab1
  t19: zab1 zab1
  t2:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t20: zab1 zab1
  t21: 2 2
  t22: true true
  t23: true true
  t24: null null
  t25: b
  t26: b b
  t3:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t4:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t5: zab1
  t6: zab1
  t7: zab1
  t8: zab1
  t9: 2
  t27:
  t28: 3
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/params2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#param_evaluation_expr
doc: Test parameter evaluation, with support for JS expressions
tags:
- inline_javascript
- command_line_tool
line: '732'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::param_evaluation_noexpr

Flake rate in main: 22.31% (Passed 101 times, Failed 29 times)

Stack Traces | 17.7s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  t1:
    bar:
      b az: 2
      b"az:
      b'az: 1
      baz: zab1
      buz:
      - a
      - b
      - c
  t10: 1
  t11: 1
  t12:
  t13: -zab1
  t14: -zab1
  t15: -zab1
  t16: -zab1
  t17: zab1 zab1
  t18: zab1 zab1
  t19: zab1 zab1
  t2:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t20: zab1 zab1
  t21: 2 2
  t22: true true
  t23: true true
  t24: null null
  t25: b
  t26: b b
  t3:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t4:
    b az: 2
    b"az:
    b'az: 1
    baz: zab1
    buz:
    - a
    - b
    - c
  t5: zab1
  t6: zab1
  t7: zab1
  t8: zab1
  t9: 2
  t27:
  t28: 3
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/params.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#param_evaluation_noexpr
doc: Test parameter evaluation, no support for JS expressions
tags:
- required
- command_line_tool
line: '654'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::param_notnull_expr

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.321s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  out: "f\n"
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/null-defined.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#param_notnull_expr
doc: Test that provided parameter is not null in expression
tags:
- inline_javascript
- command_line_tool
line: '1489'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::resreq_step_overrides_wf

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.229s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/steplevel-resreq.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#resreq_step_overrides_wf
doc: Test that ResourceRequirement on a step level redefines requirement on the 
  workflow level
output:
  out:
    location: cores.txt
    size: 2
    class: File
    checksum: sha1$e5fa44f2b31c1fb553b6021e7360d07d5d91ff5e
tags:
- resource
- workflow
line: '1757'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::scatter_all_input_defaults

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.345s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  result:
  - class: File
    checksum: sha1$4bb9bb2748a4380f12c039a9c2268115b816a6de
  - class: File
    checksum: sha1$cf42ecac010c90a72257a573a5ce7efb7d6f0e08
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-defaults.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#scatter_all_input_defaults
doc: Test workflow scatter with single scatter parameter and two default inputs
tags:
- scatter
- workflow
line: '1831'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::scatter_embedded_subworkflow

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.205s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines3-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines18-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#scatter_embedded_subworkflow
doc: Test simple scatter over an embedded subworkflow
tags:
- workflow
- inline_javascript
line: '1895'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::scatter_multi_input_embedded_subworkflow

Flake rate in main: 17.19% (Passed 106 times, Failed 22 times)

Stack Traces | 0.381s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines4-job.json
output:
  count_output:
  - 16
  - 1
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines14-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#scatter_multi_input_embedded_subworkflow
doc: Test simple multiple input scatter over an embedded subworkflow
tags:
- workflow
- scatter
- subworkflow
- multiple_input
- inline_javascript
line: '1903'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::secondary_files_in_named_records

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.4s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/record-secondaryFiles-job.yml
output: {}
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/record-sd-secondaryFiles.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#secondary_files_in_named_records
doc: Test secondaryFiles on SchemaDefRequirement record fields
tags:
- command_line_tool
- schema_def
line: '2521'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::shelldir_notinterpreted

Flake rate in main: 17.19% (Passed 106 times, Failed 22 times)

Stack Traces | 0.156s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  stderr_file:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: Any
    class: File
    size: 0
  stdout_file:
    checksum: sha1$1555252d52d4ec3262538a4426a83a99cfff4402
    location: Any
    class: File
    size: 9
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/shellchar.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#shelldir_notinterpreted
doc: Test that shell directives are not interpreted.
tags:
- required
- command_line_tool
line: '1553'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::shelldir_quoted

Flake rate in main: 17.19% (Passed 106 times, Failed 22 times)

Stack Traces | 0.194s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  stderr_file:
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    location: Any
    class: File
    size: 0
  stdout_file:
    checksum: sha1$1555252d52d4ec3262538a4426a83a99cfff4402
    location: Any
    class: File
    size: 9
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/shellchar2.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#shelldir_quoted
doc: Test that shell directives are quoted.
tags:
- shell_command
- command_line_tool
line: '1573'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stderr_redirect

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.556s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect
doc: Test command line with stderr redirection
output:
  output_file:
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
    location: error.txt
tags:
- required
- command_line_tool
line: '101'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stderr_redirect_mediumcut

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.134s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: output:
  output_file:
    class: File
    size: 4
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    location: std.err
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr-mediumcut.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect_mediumcut
doc: Test command line with stderr redirection, named brief syntax
tags:
- required
- command_line_tool
line: '125'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stderr_redirect_shortcut

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.449s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stderr-shortcut.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stderr_redirect_shortcut
doc: Test command line with stderr redirection, brief syntax
output:
  output_file:
    class: File
    checksum: sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15
    size: 4
    location: Any
tags:
- required
- command_line_tool
line: '113'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdinout_redirect

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.103s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output:
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    class: File
    location: output
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdinout_redirect
doc: Test command execution in with stdin and stdout redirection
tags:
- required
- command_line_tool
line: '205'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdinout_redirect_docker

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.074s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output_txt:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: output.txt
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat4-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdinout_redirect_docker
doc: Test command execution in Docker with stdin and stdout redirection
tags:
- required
- command_line_tool
line: '137'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdout_redirect_docker

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 16.2s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: output.txt
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_docker
doc: Test command execution in Docker with stdout redirection
tags:
- docker
- command_line_tool
line: '65'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdout_redirect_mediumcut_docker

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.276s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: cat-out
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool-mediumcut.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_mediumcut_docker
doc: Test command execution in Docker with mediumcut stdout redirection
tags:
- docker
- command_line_tool
line: '89'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::stdout_redirect_shortcut_docker

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.151s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat3-tool-shortcut.cwl
output:
  output_file:
    class: File
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    location: Any
    size: 13
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#stdout_redirect_shortcut_docker
doc: Test command execution in Docker with shortcut stdout redirection
tags:
- docker
- command_line_tool
line: '77'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value_noexp

Flake rate in main: 17.19% (Passed 106 times, Failed 22 times)

Stack Traces | 0.13s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  wc_output:
    class: File
    checksum: sha1$3596ea087bfdaf52380eae441077572ed289d657
    size: 3
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines9-wf-noET.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_noexp
doc: Test default value on step input parameter, no ExpressionTool
tags:
- workflow
- required
line: '2276'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value_overriden_2nd_step

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.24s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  count_output: 1
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_overriden_2nd_step
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-extra-step-wf.cwl
doc: Test default value on step input parameter overridden by provided source. 
  With passthrough first step
tags:
- workflow
- inline_javascript
line: '2367'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value_overriden_2nd_step_noexp

Flake rate in main: 19.53% (Passed 103 times, Failed 25 times)

Stack Traces | 0.377s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  wc_output:
    class: File
    checksum: sha1$e5fa44f2b31c1fb553b6021e7360d07d5d91ff5e
    size: 2
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_overriden_2nd_step_noexp
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-extra-step-wf-noET.cwl
doc: Test default value on step input parameter overridden by provided source. 
  With passthrough first step and no ExpressionTool
tags:
- workflow
- required
line: '2376'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::step_input_default_value_overriden_noexp

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.194s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/cat-job.json
output:
  wc_output:
    class: File
    checksum: sha1$e5fa44f2b31c1fb553b6021e7360d07d5d91ff5e
    size: 2
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines11-wf-noET.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#step_input_default_value_overriden_noexp
doc: Test default value on step input parameter overridden by provided source, 
  no ExpressionTool
tags:
- workflow
- required
line: '2287'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::success_codes

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.196s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/exit-success.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#success_codes
doc: Test successCodes
job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output: {}
tags:
- required
- command_line_tool
line: '1728'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::valuefrom_constant_overrides_inputs

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.338s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/array-of-strings-job.yml
output:
  args:
  - replacementValue
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/valueFrom-constant.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#valuefrom_constant_overrides_inputs
doc: Test valueFrom with constant value overriding provided array inputs
tags:
- required
- command_line_tool
line: '1770'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_compound_doc

Flake rate in main: 19.23% (Passed 105 times, Failed 25 times)

Stack Traces | 0.416s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort-job.json
output:
  output:
    class: File
    checksum: sha1$b9214658cc453331b62c2282b772a5c063dbd284
    location: output.txt
    size: 1111
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/revsort-packed.cwl#main
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_compound_doc
doc: Test compound workflow document
tags:
- required
- workflow
line: '1497'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_multiplesources_multipletypes

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.574s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/sum-job.json
output:
  result: 12
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/sum-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_multiplesources_multipletypes
doc: Test step input with multiple sources with multiple types
tags:
- step_input
- inline_javascript
- multiple_input
- workflow
line: '1545'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_multiplesources_multipletypes_noexp

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.187s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/sum-job.json
output:
  result:
    class: File
    checksum: sha1$ad552e6dc057d1d825bf49df79d6b98eba846ebe
    size: 3
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_multiplesources_multipletypes_noexp
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/sum-wf-noET.cwl
doc: Test step input with multiple sources with multiple types, without 
  ExpressionTool
tags:
- workflow
- step_input
- inline_javascript
- multiple_input
line: '2309'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_oneparam_valueFrom

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 9.46s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job3.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-wf6.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valueFrom
doc: Test valueFrom eval on scattered input parameter
output:
  out_message:
  - checksum: sha1$98030575f6fc40e5021be5a8803a6bef94aee11f
    location: Any
    class: File
    size: 16
  - checksum: sha1$edcacd50778d98ae113015406b3195c165059dd8
    location: Any
    class: File
    size: 16
tags:
- scatter
- step_input
- workflow
line: '1066'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_oneparam_valuefrom_inputs

Flake rate in main: 19.23% (Passed 105 times, Failed 25 times)

Stack Traces | 0.853s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-job1.json
output:
  out:
  - foo one one
  - foo one two
  - foo one three
  - foo one four
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-inputs-wf1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_oneparam_valuefrom_inputs
doc: Test workflow scatter with single scatter parameter and two valueFrom using
  $inputs (first and current el)
tags:
- scatter
- step_input
- workflow
line: '1823'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_twopar_oneinput_flattenedmerge

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.177s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines6-job.json
output:
  count_output: 34
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines12-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_twopar_oneinput_flattenedmerge
doc: Test single step workflow with Scatter step and two data links connected to
  same input, flattened merge behavior. Workflow inputs are set as list
tags:
- multiple_input
- inline_javascript
- workflow
line: '1535'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_scatter_valuefrom_default

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.505s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/bwa-mem-job.json
output:
  out1:
  - foo 1
  - foo 2
  - foo 3
  - foo 4
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/scatter-valuefrom-default.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_scatter_valuefrom_default
doc: Test workflow scatter with single scatter parameter, a valueFrom in the 
  WorkflowStep and a default value inside the step
tags:
- scatter
- step_input
- workflow
line: '1847'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_step_connect_undeclared_param

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.302s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/pass-unconnected.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_step_connect_undeclared_param
doc: Test that it is not an error to connect a parameter to a workflow step, 
  even if the parameter doesn't appear in the `run` process inputs.
output:
  out: "hello inp1\n"
tags:
- required
- workflow
line: '1792'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_two_inputfiles_namecollision

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.833s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/conflict-job.json
output:
  fileout:
    location: out.txt
    checksum: sha1$a2d8d6e7b28295dc9977dc3bdb652ddd480995f0
    class: File
    size: 25
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/conflict-wf.cwl#collision
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_two_inputfiles_namecollision
doc: Test workflow two input files with same name.
tags:
- required
- workflow
line: '1087'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_expressiontool

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.225s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines2-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_expressiontool
doc: Test two step workflow with inline tools
tags:
- inline_javascript
- workflow
line: '238'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::wf_wc_parseInt

Flake rate in main: 20.00% (Passed 104 times, Failed 26 times)

Stack Traces | 0.417s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines1-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#wf_wc_parseInt
doc: Test two step workflow with imported tools
tags:
- inline_javascript
- workflow
line: '231'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_file_provided

Flake rate in main: 18.46% (Passed 106 times, Failed 24 times)

Stack Traces | 0.47s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-file.json
output:
  t1: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_file_provided
doc: Test Any parameter with file input to a workflow
tags:
- workflow
- inline_javascript
line: '2135'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_mixed_array_provided

Flake rate in main: 18.46% (Passed 106 times, Failed 24 times)

Stack Traces | 0.299s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-array.json
output:
  t1:
  - 1
  - moocow
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_mixed_array_provided
doc: Test Any parameter with array input to a workflow
tags:
- workflow
- inline_javascript
line: '2142'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_any_input_with_record_provided

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.105s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-record.json
output:
  t1:
    moo: 1
    cow: 5
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-wf-1.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_any_input_with_record_provided
doc: Test Any parameter with record input to a tool
tags:
- workflow
- inline_javascript
line: '2149'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_embedded_subworkflow_embedded_subsubworkflow

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.295s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines15-wf.cwl
doc: Test twice nested subworkflow
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_embedded_subworkflow_embedded_subsubworkflow
tags:
- workflow
- subworkflow
- inline_javascript
line: '1911'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_embedded_subworkflow_with_subsubworkflow_and_tool

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.265s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines17-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_embedded_subworkflow_with_subsubworkflow_and_tool
doc: Test subworkflow of mixed depth with tool after
tags:
- workflow
- subworkflow
- inline_javascript
line: '1925'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_embedded_subworkflow_with_tool_and_subsubworkflow

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.422s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  count_output: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/count-lines16-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_embedded_subworkflow_with_tool_and_subsubworkflow
doc: Test subworkflow of mixed depth with tool first
tags:
- workflow
- subworkflow
- inline_javascript
line: '1918'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_file_array_output

Flake rate in main: 17.19% (Passed 106 times, Failed 22 times)

Stack Traces | 0.323s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/output-arrays-file-job.json
output:
  o:
  - basename: moo
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    class: File
    location: Any
    size: 0
  - basename: cow
    checksum: sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709
    class: File
    location: Any
    size: 0
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/output-arrays-file-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_file_array_output
doc: Test output arrays in a workflow (with Files).
tags:
- workflow
- expression_tool
- inline_javascript
line: '2198'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_file_input_default_specified

Flake rate in main: 19.53% (Passed 103 times, Failed 25 times)

Stack Traces | 0.184s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/default_path_job.yml
output:
  o:
    class: File
    basename: output
    location: Any
    checksum: sha1$47a013e660d408619d894b20806b1d5086aab03b
    size: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_file_input_default_specified
doc: Test File input with default specified to workflow
tags:
- workflow
line: '2017'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_file_input_default_unspecified

Flake rate in main: 19.53% (Passed 103 times, Failed 25 times)

Stack Traces | 0.144s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  o:
    class: File
    basename: output
    size: 1111
    location: Any
    checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-file-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_file_input_default_unspecified
doc: Test File input with default unspecified to workflow
tags:
- workflow
line: '2004'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_integer_input

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.101s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int.json
output:
  o: 250
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input
doc: Test integer workflow input and outputs
tags:
- workflow
- inline_javascript
- expression_tool
line: '1953'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_integer_input_default_and_tool_integer_input_default

Flake rate in main: 19.53% (Passed 103 times, Failed 25 times)

Stack Traces | 0.494s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  o: 13
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-default-tool-and-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_default_and_tool_integer_input_default
doc: Test default integer tool and workflow inputs (unspecified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1997'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_integer_input_default_specified

Flake rate in main: 19.53% (Passed 103 times, Failed 25 times)

Stack Traces | 0.573s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int.json
output:
  o: 250
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_default_specified
doc: Test default integer workflow inputs (specified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1983'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_integer_input_default_unspecified

Flake rate in main: 19.53% (Passed 103 times, Failed 25 times)

Stack Traces | 0.538s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  o: 128
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_default_unspecified
doc: Test default integer workflow inputs (unspecified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1990'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_integer_input_optional_specified

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.219s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int.json
output:
  o: 250
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-optional-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_optional_specified
doc: Test optional integer workflow inputs (specified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1960'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_integer_input_optional_unspecified

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.28s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  o: 16
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-int-optional-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_integer_input_optional_unspecified
doc: Test optional integer workflow inputs (unspecified)
tags:
- workflow
- inline_javascript
- expression_tool
line: '1967'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_records_inputs_and_outputs

Flake rate in main: 18.75% (Passed 104 times, Failed 24 times)

Stack Traces | 0.254s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/record-output-job.json
output:
  orec:
    ofoo:
      location: foo
      size: 1111
      class: File
      checksum: sha1$327fc7aedf4f6b69a42a7c8b808dc5a7aff61376
    obar:
      location: bar
      size: 12010
      class: File
      checksum: sha1$aeb3d11bdf536511649129f4077d5cda6a324118
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/record-output-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_records_inputs_and_outputs
doc: Test record type inputs to and outputs from workflows.
tags:
- workflow
- shell_command
line: '1932'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_union_default_input_unspecified

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.101s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  o: the default value
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-union-input-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_union_default_input_unspecified
doc: Test union type input to workflow with default unspecified
tags:
- workflow
- inline_javascript
- expression_tool
line: '2156'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflow_union_default_input_with_file_provided

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.204s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-any-file.json
output:
  o: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/io-union-input-default-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflow_union_default_input_with_file_provided
doc: Test union type input to workflow with default specified as file
tags:
- workflow
- inline_javascript
- expression_tool
line: '2163'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflowstep_int_array_input_output

Flake rate in main: 17.19% (Passed 106 times, Failed 22 times)

Stack Traces | 0.353s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/output-arrays-int-job.json
output:
  o: 12
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/output-arrays-int-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflowstep_int_array_input_output
doc: Test output arrays in a workflow (with ints).
tags:
- workflow
- expression_tool
- inline_javascript
line: '2191'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflowstep_valuefrom_file_basename

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.339s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/wc-job.json
output:
  val1: "whale.txt\n"
  val2: "step1_out\n"
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/step-valuefrom5-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflowstep_valuefrom_file_basename
doc: Test valueFrom on workflow step using basename.
tags:
- workflow
- step_input
line: '2177'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::workflowstep_valuefrom_string

Flake rate in main: 17.97% (Passed 105 times, Failed 23 times)

Stack Traces | 0.099s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/empty.json
output:
  val: "moocow\n"
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/step-valuefrom4-wf.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#workflowstep_valuefrom_string
doc: Test valueFrom on workflow step from literal (string).
tags:
- workflow
- step_input
line: '2170'
cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml::conformance_tests::cwltest::yaml::writable_stagedfiles

Flake rate in main: 20.77% (Passed 103 times, Failed 27 times)

Stack Traces | 0.164s run time
CWL test execution failed. 
Returned non-zero but it should be zero
Test: job: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stagefile-job.yml
output:
  outfile:
    checksum: sha1$b769c7b2e316edd4b5eb2d24799b2c1f9d8c86e6
    size: 1111
    location: bob.txt
    class: File
tool: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/tests/stagefile.cwl
id: 
  file:.../streamflow-postgresql/streamflow-postgresql/cwl-v1.3-2063e9095f421f2a2ce12abaf196b2ba06ca5aae/conformance_tests.cwltest.yaml#writable_stagedfiles
doc: Test writable staged files.
tags:
- initial_work_dir
- command_line_tool
line: '1179'

To view more test analytics, go to the Test Analytics Dashboard
📋 Got 3 mins? Take this short survey to help us improve Test Analytics.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code

Projects

None yet

Development

Successfully merging this pull request may close these issues.

0 participants