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- DOME2 Public
Code repository for Interspecies cooperation in the farm-associated nasal microbiome (2026)
- Breast_microbiome Public
All scripts for the Breast Microbiome project (R, Bash, Python) with analyses and pipelines
- NEC_phageome Public
Divergent Microbial Preludes to Necrotizing Enterocolitis Defined by Gut Phages and Bacterial Resistomes
- SIG_phageome Public
Unique bacterial-phage interaction signatures distinguish Staphylococcus pseudintermedius in diagnostic environments
- 2025_DuodenumRTMicrobiome Public
Analysis of duodenum and stool microbiomes after focal duodenal irradiation in mice.
- 2023_Blake_TrEAT-PREVENT-TD Public archive
Data, code, and analyses for Blake, Schwartz, Paruthiyil et al. (2023). mBio. PMID: 38085102.
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