chore(deps): bump actions/download-artifact from 4.1.8 to 8.0.1 by dependabot[bot] · Pull Request #228 · microsoft/bioemu

dependabot · 2026-07-17T12:29:11Z

Bumps actions/download-artifact from 4.1.8 to 8.0.1.

Release notes

Sourced from actions/download-artifact's releases.

v8.0.1

What's Changed

Support for CJK characters in the artifact name by @danwkennedy in actions/download-artifact#471

Add a regression test for artifact name + content-type mismatches by @danwkennedy in actions/download-artifact#472

Full Changelog: actions/download-artifact@v8...v8.0.1

v8.0.0

v8 - What's new

[!IMPORTANT] actions/download-artifact@v8 has been migrated to an ESM module. This should be transparent to the caller but forks might need to make significant changes.

[!IMPORTANT] Hash mismatches will now error by default. Users can override this behavior with a setting change (see below).

Direct downloads

To support direct uploads in actions/upload-artifact, the action will no longer attempt to unzip all downloaded files. Instead, the action checks the Content-Type header ahead of unzipping and skips non-zipped files. Callers wishing to download a zipped file as-is can also set the new skip-decompress parameter to true.

Enforced checks (breaking)

A previous release introduced digest checks on the download. If a download hash didn't match the expected hash from the server, the action would log a warning. Callers can now configure the behavior on mismatch with the digest-mismatch parameter. To be secure by default, we are now defaulting the behavior to error which will fail the workflow run.

ESM

To support new versions of the @actions/* packages, we've upgraded the package to ESM.

What's Changed

Don't attempt to un-zip non-zipped downloads by @danwkennedy in actions/download-artifact#460

Add a setting to specify what to do on hash mismatch and default it to error by @danwkennedy in actions/download-artifact#461

Full Changelog: actions/download-artifact@v7...v8.0.0

v7.0.0

v7 - What's new

[!IMPORTANT] actions/download-artifact@v7 now runs on Node.js 24 (runs.using: node24) and requires a minimum Actions Runner version of 2.327.1. If you are using self-hosted runners, ensure they are updated before upgrading.

Node.js 24

This release updates the runtime to Node.js 24. v6 had preliminary support for Node 24, however this action was by default still running on Node.js 20. Now this action by default will run on Node.js 24.

What's Changed

Update GHES guidance to include reference to Node 20 version by @patrikpolyak in actions/download-artifact#440

Download Artifact Node24 support by @salmanmkc in actions/download-artifact#415

fix: update @actions/artifact to fix Node.js 24 punycode deprecation by @salmanmkc in actions/download-artifact#451

prepare release v7.0.0 for Node.js 24 support by @salmanmkc in actions/download-artifact#452

... (truncated)

Commits

3e5f45b Add regression tests for CJK characters (#471)
e6d03f6 Add a regression test for artifact name + content-type mismatches (#472)
70fc10c Merge pull request #461 from actions/danwkennedy/digest-mismatch-behavior
f258da9 Add change docs
ccc058e Fix linting issues
bd7976b Add a setting to specify what to do on hash mismatch and default it to error
ac21fcf Merge pull request #460 from actions/danwkennedy/download-no-unzip
15999bf Add note about package bumps
974686e Bump the version to v8 and add release notes
fbe48b1 Update test names to make it clearer what they do
Additional commits viewable in compare view

github-actions · 2026-07-17T12:52:37Z

Summary


Generated on:	07/17/2026 - 12:52:37
Parser:	Cobertura
Assemblies:	5
Classes:	32
Files:	32
Line coverage:	86.4% (2182 of 2524)
Covered lines:	2182
Uncovered lines:	342
Coverable lines:	2524
Total lines:	8079
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 89%

Name	Line	Branch
src.bioemu	89%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	97%
denoiser.py	98.3%
get_embeds.py	92.1%
md_utils.py	85.8%
model_utils.py	78%
models.py	94.1%
run_hpacker.py	0%
sample.py	92.2%
sde_lib.py	88.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	75%
so3_sde.py	90.3%
structure_module.py	84.3%
utils.py	65.6%

src.bioemu.colabfold_inline - 79.1%

Name	Line	Branch
src.bioemu.colabfold_inline	79.1%	****
init.py
features.py	100%
input_parsing.py	100%
model_runner.py	99%
msa_client.py	60.8%

src.bioemu.hpacker_setup - 69.2%

Name	Line	Branch
src.bioemu.hpacker_setup	69.2%	****
init.py
setup_hpacker.py	69.2%

src.bioemu.steering - 79.5%

Name	Line	Branch
src.bioemu.steering	79.5%	****
init.py	100%
collective_variables.py	34.8%
dpm_fkc.py	100%
dpm_smc.py	100%
potentials.py	95.3%
utils.py	83.5%

src.bioemu.training - 100%

Name	Line	Branch
src.bioemu.training	100%	****
foldedness.py	100%
loss.py	100%

github-actions · 2026-07-20T08:56:27Z

Summary


Generated on:	07/20/2026 - 08:56:24
Parser:	Cobertura
Assemblies:	5
Classes:	32
Files:	32
Line coverage:	86.4% (2181 of 2524)
Covered lines:	2181
Uncovered lines:	343
Coverable lines:	2524
Total lines:	8079
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 88.9%

Name	Line	Branch
src.bioemu	88.9%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	96.4%
denoiser.py	98.3%
get_embeds.py	92.1%
md_utils.py	85.8%
model_utils.py	78%
models.py	94.1%
run_hpacker.py	0%
sample.py	92.2%
sde_lib.py	88.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	75%
so3_sde.py	90.3%
structure_module.py	84.3%
utils.py	65.6%

src.bioemu.colabfold_inline - 79.1%

Name	Line	Branch
src.bioemu.colabfold_inline	79.1%	****
init.py
features.py	100%
input_parsing.py	100%
model_runner.py	99%
msa_client.py	60.8%

src.bioemu.hpacker_setup - 69.2%

Name	Line	Branch
src.bioemu.hpacker_setup	69.2%	****
init.py
setup_hpacker.py	69.2%

src.bioemu.steering - 79.5%

Name	Line	Branch
src.bioemu.steering	79.5%	****
init.py	100%
collective_variables.py	34.8%
dpm_fkc.py	100%
dpm_smc.py	100%
potentials.py	95.3%
utils.py	83.5%

src.bioemu.training - 100%

Name	Line	Branch
src.bioemu.training	100%	****
foldedness.py	100%
loss.py	100%

github-actions · 2026-07-20T09:22:48Z

Summary


Generated on:	07/20/2026 - 09:22:47
Parser:	Cobertura
Assemblies:	5
Classes:	32
Files:	32
Line coverage:	86.4% (2181 of 2524)
Covered lines:	2181
Uncovered lines:	343
Coverable lines:	2524
Total lines:	8079
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 88.9%

Name	Line	Branch
src.bioemu	88.9%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	96.4%
denoiser.py	98.3%
get_embeds.py	92.1%
md_utils.py	85.8%
model_utils.py	78%
models.py	94.1%
run_hpacker.py	0%
sample.py	92.2%
sde_lib.py	88.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	75%
so3_sde.py	90.3%
structure_module.py	84.3%
utils.py	65.6%

src.bioemu.colabfold_inline - 79.1%

Name	Line	Branch
src.bioemu.colabfold_inline	79.1%	****
init.py
features.py	100%
input_parsing.py	100%
model_runner.py	99%
msa_client.py	60.8%

src.bioemu.hpacker_setup - 69.2%

Name	Line	Branch
src.bioemu.hpacker_setup	69.2%	****
init.py
setup_hpacker.py	69.2%

src.bioemu.steering - 79.5%

Name	Line	Branch
src.bioemu.steering	79.5%	****
init.py	100%
collective_variables.py	34.8%
dpm_fkc.py	100%
dpm_smc.py	100%
potentials.py	95.3%
utils.py	83.5%

src.bioemu.training - 100%

Name	Line	Branch
src.bioemu.training	100%	****
foldedness.py	100%
loss.py	100%

github-actions · 2026-07-20T09:47:04Z

Summary


Generated on:	07/20/2026 - 09:47:02
Parser:	Cobertura
Assemblies:	5
Classes:	32
Files:	32
Line coverage:	86.4% (2182 of 2524)
Covered lines:	2182
Uncovered lines:	342
Coverable lines:	2524
Total lines:	8079
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 89%

Name	Line	Branch
src.bioemu	89%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	97%
denoiser.py	98.3%
get_embeds.py	92.1%
md_utils.py	85.8%
model_utils.py	78%
models.py	94.1%
run_hpacker.py	0%
sample.py	92.2%
sde_lib.py	88.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	75%
so3_sde.py	90.3%
structure_module.py	84.3%
utils.py	65.6%

src.bioemu.colabfold_inline - 79.1%

Name	Line	Branch
src.bioemu.colabfold_inline	79.1%	****
init.py
features.py	100%
input_parsing.py	100%
model_runner.py	99%
msa_client.py	60.8%

src.bioemu.hpacker_setup - 69.2%

Name	Line	Branch
src.bioemu.hpacker_setup	69.2%	****
init.py
setup_hpacker.py	69.2%

src.bioemu.steering - 79.5%

Name	Line	Branch
src.bioemu.steering	79.5%	****
init.py	100%
collective_variables.py	34.8%
dpm_fkc.py	100%
dpm_smc.py	100%
potentials.py	95.3%
utils.py	83.5%

src.bioemu.training - 100%

Name	Line	Branch
src.bioemu.training	100%	****
foldedness.py	100%
loss.py	100%

github-actions · 2026-07-20T13:08:23Z

Summary


Generated on:	07/20/2026 - 13:08:22
Parser:	Cobertura
Assemblies:	5
Classes:	32
Files:	32
Line coverage:	86.4% (2182 of 2524)
Covered lines:	2182
Uncovered lines:	342
Coverable lines:	2524
Total lines:	8079
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 89%

Name	Line	Branch
src.bioemu	89%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	97%
denoiser.py	98.3%
get_embeds.py	92.1%
md_utils.py	85.8%
model_utils.py	78%
models.py	94.1%
run_hpacker.py	0%
sample.py	92.2%
sde_lib.py	88.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	75%
so3_sde.py	90.3%
structure_module.py	84.3%
utils.py	65.6%

src.bioemu.colabfold_inline - 79.1%

Name	Line	Branch
src.bioemu.colabfold_inline	79.1%	****
init.py
features.py	100%
input_parsing.py	100%
model_runner.py	99%
msa_client.py	60.8%

src.bioemu.hpacker_setup - 69.2%

Name	Line	Branch
src.bioemu.hpacker_setup	69.2%	****
init.py
setup_hpacker.py	69.2%

src.bioemu.steering - 79.5%

Name	Line	Branch
src.bioemu.steering	79.5%	****
init.py	100%
collective_variables.py	34.8%
dpm_fkc.py	100%
dpm_smc.py	100%
potentials.py	95.3%
utils.py	83.5%

src.bioemu.training - 100%

Name	Line	Branch
src.bioemu.training	100%	****
foldedness.py	100%
loss.py	100%

Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 4.1.8 to 8.0.1. - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](actions/download-artifact@fa0a91b...3e5f45b) --- updated-dependencies: - dependency-name: actions/download-artifact dependency-version: 8.0.1 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>

github-actions · 2026-07-20T14:07:51Z

Summary


Generated on:	07/20/2026 - 14:07:50
Parser:	Cobertura
Assemblies:	5
Classes:	32
Files:	32
Line coverage:	86.4% (2182 of 2524)
Covered lines:	2182
Uncovered lines:	342
Coverable lines:	2524
Total lines:	8079
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 89%

Name	Line	Branch
src.bioemu	89%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	97%
denoiser.py	98.3%
get_embeds.py	92.1%
md_utils.py	85.8%
model_utils.py	78%
models.py	94.1%
run_hpacker.py	0%
sample.py	92.2%
sde_lib.py	88.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	75%
so3_sde.py	90.3%
structure_module.py	84.3%
utils.py	65.6%

src.bioemu.colabfold_inline - 79.1%

Name	Line	Branch
src.bioemu.colabfold_inline	79.1%	****
init.py
features.py	100%
input_parsing.py	100%
model_runner.py	99%
msa_client.py	60.8%

src.bioemu.hpacker_setup - 69.2%

Name	Line	Branch
src.bioemu.hpacker_setup	69.2%	****
init.py
setup_hpacker.py	69.2%

src.bioemu.steering - 79.5%

Name	Line	Branch
src.bioemu.steering	79.5%	****
init.py	100%
collective_variables.py	34.8%
dpm_fkc.py	100%
dpm_smc.py	100%
potentials.py	95.3%
utils.py	83.5%

src.bioemu.training - 100%

Name	Line	Branch
src.bioemu.training	100%	****
foldedness.py	100%
loss.py	100%

…rtifact-8.0.1

github-actions · 2026-07-20T14:32:25Z

Summary


Generated on:	07/20/2026 - 14:32:24
Parser:	Cobertura
Assemblies:	5
Classes:	32
Files:	32
Line coverage:	86.4% (2181 of 2524)
Covered lines:	2181
Uncovered lines:	343
Coverable lines:	2524
Total lines:	8079
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 88.9%

Name	Line	Branch
src.bioemu	88.9%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	96.4%
denoiser.py	98.3%
get_embeds.py	92.1%
md_utils.py	85.8%
model_utils.py	78%
models.py	94.1%
run_hpacker.py	0%
sample.py	92.2%
sde_lib.py	88.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	75%
so3_sde.py	90.3%
structure_module.py	84.3%
utils.py	65.6%

src.bioemu.colabfold_inline - 79.1%

Name	Line	Branch
src.bioemu.colabfold_inline	79.1%	****
init.py
features.py	100%
input_parsing.py	100%
model_runner.py	99%
msa_client.py	60.8%

src.bioemu.hpacker_setup - 69.2%

Name	Line	Branch
src.bioemu.hpacker_setup	69.2%	****
init.py
setup_hpacker.py	69.2%

src.bioemu.steering - 79.5%

Name	Line	Branch
src.bioemu.steering	79.5%	****
init.py	100%
collective_variables.py	34.8%
dpm_fkc.py	100%
dpm_smc.py	100%
potentials.py	95.3%
utils.py	83.5%

src.bioemu.training - 100%

Name	Line	Branch
src.bioemu.training	100%	****
foldedness.py	100%
loss.py	100%

github-actions · 2026-07-20T14:34:31Z

Summary


Generated on:	07/20/2026 - 14:34:30
Parser:	Cobertura
Assemblies:	5
Classes:	32
Files:	32
Line coverage:	86.4% (2182 of 2524)
Covered lines:	2182
Uncovered lines:	342
Coverable lines:	2524
Total lines:	8079
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 89%

Name	Line	Branch
src.bioemu	89%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	97%
denoiser.py	98.3%
get_embeds.py	92.1%
md_utils.py	85.8%
model_utils.py	78%
models.py	94.1%
run_hpacker.py	0%
sample.py	92.2%
sde_lib.py	88.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	75%
so3_sde.py	90.3%
structure_module.py	84.3%
utils.py	65.6%

src.bioemu.colabfold_inline - 79.1%

Name	Line	Branch
src.bioemu.colabfold_inline	79.1%	****
init.py
features.py	100%
input_parsing.py	100%
model_runner.py	99%
msa_client.py	60.8%

src.bioemu.hpacker_setup - 69.2%

Name	Line	Branch
src.bioemu.hpacker_setup	69.2%	****
init.py
setup_hpacker.py	69.2%

src.bioemu.steering - 79.5%

Name	Line	Branch
src.bioemu.steering	79.5%	****
init.py	100%
collective_variables.py	34.8%
dpm_fkc.py	100%
dpm_smc.py	100%
potentials.py	95.3%
utils.py	83.5%

src.bioemu.training - 100%

Name	Line	Branch
src.bioemu.training	100%	****
foldedness.py	100%
loss.py	100%

…rtifact-8.0.1

github-actions · 2026-07-20T15:00:41Z

Summary


Generated on:	07/20/2026 - 15:00:40
Parser:	Cobertura
Assemblies:	5
Classes:	32
Files:	32
Line coverage:	86.4% (2182 of 2524)
Covered lines:	2182
Uncovered lines:	342
Coverable lines:	2524
Total lines:	8079
Covered branches:	0
Total branches:	0
Method coverage:	Feature is only available for sponsors

Coverage

src.bioemu - 89%

Name	Line	Branch
src.bioemu	89%	****
init.py	100%
chemgraph.py	100%
convert_chemgraph.py	97%
denoiser.py	98.3%
get_embeds.py	92.1%
md_utils.py	85.8%
model_utils.py	78%
models.py	94.1%
run_hpacker.py	0%
sample.py	92.2%
sde_lib.py	88.3%
seq_io.py	100%
shortcuts.py	100%
sidechain_relax.py	75%
so3_sde.py	90.3%
structure_module.py	84.3%
utils.py	65.6%

src.bioemu.colabfold_inline - 79.1%

Name	Line	Branch
src.bioemu.colabfold_inline	79.1%	****
init.py
features.py	100%
input_parsing.py	100%
model_runner.py	99%
msa_client.py	60.8%

src.bioemu.hpacker_setup - 69.2%

Name	Line	Branch
src.bioemu.hpacker_setup	69.2%	****
init.py
setup_hpacker.py	69.2%

src.bioemu.steering - 79.5%

Name	Line	Branch
src.bioemu.steering	79.5%	****
init.py	100%
collective_variables.py	34.8%
dpm_fkc.py	100%
dpm_smc.py	100%
potentials.py	95.3%
utils.py	83.5%

src.bioemu.training - 100%

Name	Line	Branch
src.bioemu.training	100%	****
foldedness.py	100%
loss.py	100%

dependabot Bot added dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code labels Jul 17, 2026

dependabot Bot force-pushed the dependabot/github_actions/actions/download-artifact-8.0.1 branch from 1550df6 to daf8f39 Compare July 20, 2026 08:34

dependabot Bot force-pushed the dependabot/github_actions/actions/download-artifact-8.0.1 branch from daf8f39 to 4480720 Compare July 20, 2026 09:02

dependabot Bot force-pushed the dependabot/github_actions/actions/download-artifact-8.0.1 branch from 4480720 to 6d0462d Compare July 20, 2026 09:23

dependabot Bot force-pushed the dependabot/github_actions/actions/download-artifact-8.0.1 branch from 6d0462d to 9bedb05 Compare July 20, 2026 12:44

sarahnlewis reviewed Jul 20, 2026

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Copilot started work on behalf of sarahnlewis July 20, 2026 13:44 View session

fix: update download-artifact comment from v4 to v8

4e4c7e0

Copilot AI requested a review from sarahnlewis July 20, 2026 13:45

Copilot finished work on behalf of sarahnlewis July 20, 2026 13:45

sarahnlewis enabled auto-merge (squash) July 20, 2026 14:09

Merge branch 'main' into dependabot/github_actions/actions/download-a…

13b7c96

…rtifact-8.0.1

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josejimenezluna approved these changes Jul 20, 2026

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Merge branch 'main' into dependabot/github_actions/actions/download-a…

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…rtifact-8.0.1

sarahnlewis merged commit a8f545d into main Jul 20, 2026
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sarahnlewis deleted the dependabot/github_actions/actions/download-artifact-8.0.1 branch July 20, 2026 15:00

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chore(deps): bump actions/download-artifact from 4.1.8 to 8.0.1#228

chore(deps): bump actions/download-artifact from 4.1.8 to 8.0.1#228
sarahnlewis merged 4 commits into
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dependabot Bot commented on behalf of github Jul 17, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

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v8.0.1

What's Changed

v8.0.0

v8 - What's new

Direct downloads

Enforced checks (breaking)

ESM

What's Changed

v7.0.0

v7 - What's new

Node.js 24

What's Changed

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github-actions Bot commented Jul 17, 2026

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github-actions Bot commented Jul 20, 2026

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dependabot Bot commented on behalf of github Jul 17, 2026 •

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