Skip to content
This repository was archived by the owner on Nov 23, 2022. It is now read-only.

orangeSi/ISfinder_database

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

4 Commits
 
 
 
 
 
 
 
 

Repository files navigation

download database from http://www-genome.biotoul.fr

python3 ISfiner.step1.py  step1
python3 ISfiner.step2.py step1.IS.ID.list outdir
rm IS.database.tmp.fa
find outdir/ -type f -name 'IS*.seq.fa'|xargs -L 1 -I {} cat {} >> IS.database.tmp.fa
python3 check.empty.py IS.database.tmp.fa IS.database.fa

IS.database.fa is the fasta database of isfinder

python version dependence

python3

python3 package dependence

Biopython BeautifulSoup requests

About

download isfinder database

Resources

Stars

13 stars

Watchers

1 watching

Forks

Releases

No releases published

Packages

 
 
 

Contributors

Languages