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Rat Genome Database

7 followers
rgd.web@mcw.edu

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rgd-core-library rgd-core-library Public

Domain layer and shared components

Java
rgd-web-application rgd-web-application Public

Code used by the RGD web site and tools

JavaScript 2
rgd-web-services rgd-web-services Public

Swagger implementation

Java
rgd-annotation-files rgd-annotation-files Public

GO annotation files in GAF, GPAD and GPI format

Repositories

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Showing 10 of 156 repositories

rgd-core-library Public
Domain layer and shared components

rat-genome-database/rgd-core-library’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jul 7, 2026
elastic-search-indexer-pipeline Public
Pipeline to create elastic search indexes.

rat-genome-database/elastic-search-indexer-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jul 7, 2026
rgd-web-application Public
Code used by the RGD web site and tools

rat-genome-database/rgd-web-application’s past year of commit activity

JavaScript 2 GPL-3.0 0 0 2 Updated Jul 7, 2026
solrUpdater Public
Updates the solor index for ontomate from the database

rat-genome-database/solrUpdater’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jul 7, 2026
perpetuate-nomenclature-to-strain-pipeline Public

rat-genome-database/perpetuate-nomenclature-to-strain-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jul 7, 2026
alliance-submission-pipeline Public
Generate and submit files for rat and human to the Alliance (https://www.alliancegenome.org/)

rat-genome-database/alliance-submission-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jul 6, 2026
solr-docs-to-postgress-pipeline Public
This pipeline extracts Solr documents from JSON files and uploads them to a PostgreSQL database. It's optimized for high performance with batch processing and parallel execution.

rat-genome-database/solr-docs-to-postgress-pipeline’s past year of commit activity

0 GPL-3.0 0 0 0 Updated Jul 6, 2026
rgd-annotation-files Public
GO annotation files in GAF, GPAD and GPI format

rat-genome-database/rgd-annotation-files’s past year of commit activity

0 GPL-3.0 0 1 0 Updated Jul 4, 2026
reference-update-pipeline Public
Reference Update Pipeline: 1) fixes duplicate RGD IDs for each reference 2) imports missing references for PubMed ids created within last few days

rat-genome-database/reference-update-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jun 30, 2026
strain-files-pipeline Public
Sends an email with strain files from the past week

rat-genome-database/strain-files-pipeline’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jun 30, 2026

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