pdb-file-processing

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SergeiNikolenko / AntibodyCluster

Archived research scripts for extracting antibody sequences from PDB and SAbDab.

python bioinformatics fasta cluster-analysis anaconda-environment clustering-algorithms sabdab antibody-sequencing amino-acid-sequencing pdb-file-processing

Updated May 11, 2023
Jupyter Notebook

radifar / pilah

Star

Protein Ligand Abstraction and Hydrogenization tool. A cheminformatic tool that separate protein and ligand from the PDB file, fix the bond order of the ligand, protonate protein and ligand separately, then write them to separate file.

protein-ligand-docking command-line-tool pdb-file-processing cheminformatics-software protein-preparation ligand-preparation protein-protonation ligand-protonation

Updated Jan 18, 2025
Python

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