pubtator
Here are 7 public repositories matching this topic...
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
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Jun 10, 2024 - Python
A Python 🐍 package to load PubTator Documents 🧾, tokenize and convert them to BILUO Format.
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Apr 17, 2023 - Python
Specifically for Entity Linking. Quick demo with MedMentions and NCBI datasets is also included.
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Mar 19, 2021 - Python
MCP server for NCBI PubTator3: biomedical literature search with gene, variant, disease and chemical entity annotation — returns compact, citable passages instead of raw BioC.
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Jul 14, 2026 - Python
Local research-only AI agent for evidence-grounded therapeutic target discovery with PubTator3, Open Targets, Neo4j, ChEMBL/RDKit, and FastAPI.
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Jun 6, 2026 - Python
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