SEMORE is a multi-layered density-based clustering module to dissect biological assemblies and a morphology fingerprinting module for quantification by multiple geometric and kinetics-based descriptors.

Matlab software for simulation of two-dimensional single particle tracking (SPT) data sets.

Machine learning tool for analysing single molecule tracking data

This repositiory contains jupyter notebooks for CNN Assisted PSF Localization (CAPL) scheme for localization microscopy

PICCS is a spatial analysis algorithm implemented in MATLAB, designed specifically for Single-Molecule Localization Microscopy (SMLM) data. It quantifies the degree of co-localization or clustering between two molecular species by calculating and fitting the Cumulative Cross-Correlation Function according to the publication by Semrau et al. (2011).

Single-Molecule Localization Microscopy scripts used in my report "Computational Methods in Single-Molecule Localization Microscopy"

Multi-Orientation MAXWELL: A novel approach to three-dimensional super resolution mapping of X-ray excited, visible light emitting fluorophores using the X-ray Light Sheet Microscopy technique MAXWELL.

Python and Matlab code for generating the high-density multi-color spectroscopic single-molecule localization microscopy (sSMLM) super-resolution images from the low density ones (upto 8-fold fewer frames) .

Computational tools for single molecule localization / superresolution microscopy (point clouds).

GUI-based application implemented in MATLAB, designed for processing microscopy images. It sharpens images using frequency-domain deconvolution and then segments them based on multi-level thresholding to identify and mask distinct lipid phases.

DETRIM (DEtection of TRansient IMmobilization) is a robust, hierarchical DBSCAN-based algorithm designed to detect both long-lived and transient immobilization events in Single-Molecule Localization Microscopy (SMLM) data.

DeepCEL0 for 2D Single Molecule Localization in Fluorescence Microscopy (2021)