An automated pipeline for genomic analysis of Varicella-zoster virus (VZV), including quality control, variant calling, consensus genome generation, and phylogenetics.
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Updated
Apr 7, 2025 - Shell
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vzv
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Reproducible Snakemake workflow for the 2023 Pakistan mpox and VZV coinfection paper: metagenomic assembly, BLAST based reference selection, BWA mapping, masked consensus, and ML phylogenies for MPXV and VZV.
bioinformatics snakemake metagenomics phylogenetics public-health pathogen-genomics vzv mpox coinfection
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Updated
Jun 1, 2026 - Python
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