End-to-end Snakemake pipeline for miRNA / small RNA-seq: QC, trimming, Bowtie/miRDeep2/miRge3 quantification, DESeq2+edgeR DE, isomiR, multiMiR targets, pathway enrichment, HTML report.
bioinformatics snakemake genomics computational-biology deseq2 differential-expression edger mirna mirdeep2 small-rna-seq isomir
-
Updated
Jul 15, 2026 - R