A rapid and accurate alignment / quantification tool for small non-coding RNAs
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Updated
Apr 8, 2026 - Python
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small-rna-seq
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End-to-end Snakemake pipeline for miRNA / small RNA-seq: QC, trimming, Bowtie/miRDeep2/miRge3 quantification, DESeq2+edgeR DE, isomiR, multiMiR targets, pathway enrichment, HTML report.
bioinformatics snakemake genomics computational-biology deseq2 differential-expression edger mirna mirdeep2 small-rna-seq isomir
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Updated
Jul 15, 2026 - R
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