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brca2

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ghoshparnabali / Identification-of-Somatic-Variants-in-Breast-Cancer-Whole-Exome-Sequencing-WES-Data

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This repository contains an end-to-end tumour-only somatic variant-calling pipeline (GATK Mutect2 + snpEff) for triple-negative breast cancer whole-exome data, focused on BRCA1/BRCA2/TP53, built on Visual Studio Code via Google Colab.

bioinformatics ngs visual-studio-code cancer-genomics multiqc variant-calling somatic-mutations wes bwa-mem whole-exome-sequencing breast-cancer snpeff mutect2 fastqc google-colab gatk4 sra-toolkit tp53 brca2 brca1
  • Updated Jul 1, 2026
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